PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00049g00006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 293aa    MW: 30878 Da    PI: 9.7275
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00049g00006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.3e-063659225
                              -S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                              k+++C  f+ t  C++G++C+F H
  Peinf101Scf00049g00006.1 36 KMKPCTKFFSTAGCQFGESCHFLH 59
                              789********************* PP
2zf-CCCH25.91.7e-0897121226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               kt+lC+ f     Ck+Gd+C+FaHg
  Peinf101Scf00049g00006.1  97 KTKLCNKFNSAEGCKFGDKCHFAHG 121
                               9***********************9 PP
3zf-CCCH34.33.8e-11260284126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               ykt+lC +f + G C +G+rC+FaHg
  Peinf101Scf00049g00006.1 260 YKTKLCENFTK-GSCTFGERCHFAHG 284
                               9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.7893462IPR000571Zinc finger, CCCH-type
SMARTSM003562.73461IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-63659IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-53661IPR000571Zinc finger, CCCH-type
PfamPF146080.434259No hitNo description
Gene3DG3DSA:4.10.1000.106.5E-1394125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-894125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.01495123IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-495122IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-697121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.45E-13162237IPR004088K Homology domain, type 1
SMARTSM003221.2E-10165235IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.0E-14166235IPR004088K Homology domain, type 1
PROSITE profilePS5008413.649166230IPR004088K Homology domain, type 1
CDDcd001057.25E-12168230No hitNo description
PfamPF000131.3E-9168232IPR004088K Homology domain, type 1
SuperFamilySSF902296.41E-9257289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-16258290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577259286IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7259285IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8260284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDIRKRNRNE AGSNFNGSFK KPKPEMDSLS GGIGGKMKPC TKFFSTAGCQ FGESCHFLHY  60
VPGGYNAVAQ MMNLAPAPTS RNAAAPPIFN GNAPATKTKL CNKFNSAEGC KFGDKCHFAH  120
GDWEIGKPIV PSHEDPRAMG AGPIPGHFGG RMEPAVSGRA ASFGTSATAK ISVDASLAGP  180
IIGKSGVNSK QICRQTGAKL AIRDHETDQT LKNIELEGTF EQISQASAMV RELINSLGSV  240
GNQGRAPAGR GGPAPAMSNY KTKLCENFTK GSCTFGERCH FAHGAAELRK SGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245694.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-103C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J6IEQ90.0A0A1J6IEQ9_NICAT; Zinc finger ccch domain-containing protein 14
STRINGXP_009780696.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-85C3H family protein