PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00041g03012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 437aa    MW: 49267.9 Da    PI: 6.8283
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00041g03012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3581.4e-109454331373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.. 83 
                               l++lLl+cA++ ssg+l+ a+++L+++ +las +gd+mqRlaa f+  La rl++ +++lykal+ +   ++n++  l  +++  
  Peinf101Scf00041g03012.1  45 LIQLLLTCANHASSGNLHHADSCLSKILQLASVTGDSMQRLAAWFASSLAVRLVKRWPGLYKALNHRGLVPNNTIVDLDLDRAri 129
                               689******************************************************************9999777777666666 PP

                      GRAS  84 .fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                f +++P++ f++ + N+ + +a++++  +Hi+D++ + +  W+++l+ L + p+gpp lRiT v++    +k +lee++ r++k
  Peinf101Scf00041g03012.1 130 iFAKAFPYMGFAYAVINRILIQAMSEDCIIHIVDLGCGDPKLWVPFLKNLVTLPNGPPYLRITCVSN----NKAMLEEMEIRIKK 210
                               7******************************************************************....9************* PP

                      GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................desvsleserdevLklvkslsP 236
                                Ae+l++pf+fn  v+ +l++l+l++L+vkpgE+la  +vl+lh +l                +++v+  ++ +e+L ++ slsP
  Peinf101Scf00041g03012.1 211 EAEALDIPFQFNH-VSVSLKELTLDMLKVKPGESLAFVSVLNLHVILaeddhinshfglnkknNNNVKDCKRMSEFLAMLHSLSP 294
                               *************.7999******************************************98877777777999*********** PP

                      GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrer 318
                               kv+++veqeadhn +++++rf+e l+yysalfds++++++  +   eer+ vE++ +g+ei+n+vaceg er+erhe++++W  r
  Peinf101Scf00041g03012.1 295 KVLILVEQEADHNLNKLVDRFVEGLYYYSALFDSIDTTFGGSNslcEERVAVEQM-FGKEIENMVACEGLEREERHERFGQWLVR 378
                               **************************************99888899*********.***************************** PP

                      GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               l++ GF+pv+l ++++++ak l++ +++dgy+v  ++gsl+++W+drp++svSaW
  Peinf101Scf00041g03012.1 379 LTRGGFRPVRLWYDIMEDAKKLVEAYGGDGYKVITQRGSLMICWHDRPIYSVSAW 433
                               ******************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.29419414IPR005202Transcription factor GRAS
PfamPF035144.8E-10745433IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDFSSPRVKP DVTLSLTLSS PTSTTTTTTD VSTEALKPDE RGVKLIQLLL TCANHASSGN  60
LHHADSCLSK ILQLASVTGD SMQRLAAWFA SSLAVRLVKR WPGLYKALNH RGLVPNNTIV  120
DLDLDRARII FAKAFPYMGF AYAVINRILI QAMSEDCIIH IVDLGCGDPK LWVPFLKNLV  180
TLPNGPPYLR ITCVSNNKAM LEEMEIRIKK EAEALDIPFQ FNHVSVSLKE LTLDMLKVKP  240
GESLAFVSVL NLHVILAEDD HINSHFGLNK KNNNNVKDCK RMSEFLAMLH SLSPKVLILV  300
EQEADHNLNK LVDRFVEGLY YYSALFDSID TTFGGSNSLC EERVAVEQMF GKEIENMVAC  360
EGLEREERHE RFGQWLVRLT RGGFRPVRLW YDIMEDAKKL VEAYGGDGYK VITQRGSLMI  420
CWHDRPIYSV SAWNCFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-483743411379Protein SCARECROW
5b3h_A2e-483743410378Protein SCARECROW
5b3h_D2e-483743410378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603019.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_016461877.10.0PREDICTED: scarecrow-like protein 3
TrEMBLA0A1S3ZCB60.0A0A1S3ZCB6_TOBAC; scarecrow-like protein 3
STRINGXP_009603019.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-113scarecrow-like 3