PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00035g41012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HB-other | ||||||||
Protein Properties | Length: 1533aa MW: 171592 Da PI: 5.8834 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 35.8 | 1.4e-11 | 9 | 48 | 18 | 57 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 l++ + yps ++ +eLA klgLt+rq k+WF+ +R k+kk Peinf101Scf00035g41012.1 9 LYAVDTYPSDATVAELAVKLGLTDRQLKMWFCHKRLKDKK 48 577899********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.098 | 1 | 49 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0017 | 2 | 53 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-9 | 5 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.9E-9 | 9 | 48 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 10 | 48 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.86E-7 | 10 | 48 | No hit | No description |
Pfam | PF05066 | 3.2E-10 | 498 | 565 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 3.9E-5 | 678 | 722 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.3E-14 | 853 | 925 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1533 aa Download sequence Send to blast |
VTVLSWRVLY AVDTYPSDAT VAELAVKLGL TDRQLKMWFC HKRLKDKKDA TGVAVMRPCS 60 GGRGTGGRKY LGESPREDLM AAEPASDCGS GSESESDSRS GCSQFDNGDV KPTVPFRYYE 120 SRKAMERRVI ACIEAQLGEP LHKDGPALGV KFDELPPGAF GAHAVVAEHQ DRCRNSFESK 180 SYGAYDTKQV NREEQSRKEM ERQDCIRREE QRMVLEQKIK EEQYQREERR VAEKREKLLQ 240 REILSAERRK QKEELRKEKE AAKQKAAMFR ATTRRIAKES IELIEDERLE LMELAASSKG 300 LSSIVSLDFD TLQNLECFRE SLCEFPPKSV KRKMPFSIEP WIASDDNVGN LLMDSRLLAE 360 IHIALLKLII KDIEDVLRAP PSGLGTNQYT AAHLEGGHPQ IVERAYLWGF DICNWQKQLN 420 LLTWPEVLRQ FGLSAGFGPQ LKKKSTDRAC LNDSDEIKGC EDVVSALRSG SAAEAAVALM 480 QEKGLKQQNR SKHRLTPGTV KFAAYHVLAL EGDKGLNVLD LANKIQKSGL RDLSTSRTPD 540 ASVSVALSRD PILFKRIAPS TYYVRPAYRK DPANAEAVLS AAREELQSYI KGSLAGQNAE 600 EIERDDDSEG EVAEGPELVD LGTPSDANKN NERCSIHTSP VNRKSKRSDE VSQQNGIYSA 660 GVELRNPSKE GSEIDESTAG EPWVQRLTEG EYSDLCVEER LNALVALIYI ANEGKTIRAI 720 LEDRLDAANA LKRQMWADAQ LDKRRLKDGI INKFHNSSFY AATEGSQIPL EVPDSKHHEA 780 SPSTMVMDIS PVVDDNVQNH HEGIPAEKSL AAQETFAGQF ISPIQQNGNT AERLRMQLKS 840 FIGHKADDFY ASRSLPLGED RRHNQYWMFA ASGSSQDPGS GRIFVESPNG CWRLIDTEEA 900 FDSLVTSLDT RGIRESHLHI MLQEIEASFR KCARRSMSHF GTAGQHGKIS RTEAAEGSSP 960 VSDIGTDSPG SSICGMSSDG CEPSSSFKIE IGRNKEEIKN SLRRYHDFQV WMWKECLNTS 1020 ISRAMRFGKK RCSPVLGICD RCLDSFFPEE DLCPSCHRIF GNVEMNAEVS EKMADYSDNL 1080 ENDYKNLMVS NSSRPLRIRL IKALLILLEV HLPFEALQSY WSEDCRKLWG LQLQNSSSAE 1140 DLLKILTRLE SVIERDHLST NFETTKELLG HHALSGTAAS EKFACPGSVP QLPWIPLTTA 1200 AVSLRLLELD SSISYDPKRK AEPGCEIEVD LPIVEKPSSR YASLKELQKV EPTEADPNGQ 1260 LIEESWDYLG NFPSGARSRH VVRTRGGGRP RVRLQKGIRS TPESSRAGIR PAETMTQVLI 1320 NLGEACGQRH ARGPRTLRRR RTEKKVVEEI LPAYLGQNGN QQTALVLPKK RRREEFGINV 1380 ERIGAANNDS NIKAATAFEG SGHKNTNGFR KWEPEYNNVN SRYDVRELTD EDGNDDNGVD 1440 DNDHDSDIYQ EHGQNLGRFV EVDGNDESNR MEDDNDDQDS GSAVGMDYRQ KMDFQDDVRA 1500 VEEVLSVCTQ DLASQNKGLK VLPSRMPKTS FPA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018629804.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT1 isoform X3 | ||||
TrEMBL | A0A1S3XL25 | 0.0 | A0A1S3XL25_TOBAC; homeobox-DDT domain protein RLT1-like | ||||
STRING | XP_009613460.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |