PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00035g41012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HB-other
Protein Properties Length: 1533aa    MW: 171592 Da    PI: 5.8834
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00035g41012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.81.4e-119481857
                              HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                              l++ + yps ++ +eLA klgLt+rq k+WF+ +R k+kk
  Peinf101Scf00035g41012.1  9 LYAVDTYPSDATVAELAVKLGLTDRQLKMWFCHKRLKDKK 48
                              577899********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.098149IPR001356Homeobox domain
SMARTSM003890.0017253IPR001356Homeobox domain
SuperFamilySSF466895.99E-9548IPR009057Homeodomain-like
PfamPF000463.9E-9948IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-91048IPR009057Homeodomain-like
CDDcd000863.86E-71048No hitNo description
PfamPF050663.2E-10498565IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156123.9E-5678722IPR028942WHIM1 domain
PfamPF156131.3E-14853925IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1533 aa     Download sequence    Send to blast
VTVLSWRVLY AVDTYPSDAT VAELAVKLGL TDRQLKMWFC HKRLKDKKDA TGVAVMRPCS  60
GGRGTGGRKY LGESPREDLM AAEPASDCGS GSESESDSRS GCSQFDNGDV KPTVPFRYYE  120
SRKAMERRVI ACIEAQLGEP LHKDGPALGV KFDELPPGAF GAHAVVAEHQ DRCRNSFESK  180
SYGAYDTKQV NREEQSRKEM ERQDCIRREE QRMVLEQKIK EEQYQREERR VAEKREKLLQ  240
REILSAERRK QKEELRKEKE AAKQKAAMFR ATTRRIAKES IELIEDERLE LMELAASSKG  300
LSSIVSLDFD TLQNLECFRE SLCEFPPKSV KRKMPFSIEP WIASDDNVGN LLMDSRLLAE  360
IHIALLKLII KDIEDVLRAP PSGLGTNQYT AAHLEGGHPQ IVERAYLWGF DICNWQKQLN  420
LLTWPEVLRQ FGLSAGFGPQ LKKKSTDRAC LNDSDEIKGC EDVVSALRSG SAAEAAVALM  480
QEKGLKQQNR SKHRLTPGTV KFAAYHVLAL EGDKGLNVLD LANKIQKSGL RDLSTSRTPD  540
ASVSVALSRD PILFKRIAPS TYYVRPAYRK DPANAEAVLS AAREELQSYI KGSLAGQNAE  600
EIERDDDSEG EVAEGPELVD LGTPSDANKN NERCSIHTSP VNRKSKRSDE VSQQNGIYSA  660
GVELRNPSKE GSEIDESTAG EPWVQRLTEG EYSDLCVEER LNALVALIYI ANEGKTIRAI  720
LEDRLDAANA LKRQMWADAQ LDKRRLKDGI INKFHNSSFY AATEGSQIPL EVPDSKHHEA  780
SPSTMVMDIS PVVDDNVQNH HEGIPAEKSL AAQETFAGQF ISPIQQNGNT AERLRMQLKS  840
FIGHKADDFY ASRSLPLGED RRHNQYWMFA ASGSSQDPGS GRIFVESPNG CWRLIDTEEA  900
FDSLVTSLDT RGIRESHLHI MLQEIEASFR KCARRSMSHF GTAGQHGKIS RTEAAEGSSP  960
VSDIGTDSPG SSICGMSSDG CEPSSSFKIE IGRNKEEIKN SLRRYHDFQV WMWKECLNTS  1020
ISRAMRFGKK RCSPVLGICD RCLDSFFPEE DLCPSCHRIF GNVEMNAEVS EKMADYSDNL  1080
ENDYKNLMVS NSSRPLRIRL IKALLILLEV HLPFEALQSY WSEDCRKLWG LQLQNSSSAE  1140
DLLKILTRLE SVIERDHLST NFETTKELLG HHALSGTAAS EKFACPGSVP QLPWIPLTTA  1200
AVSLRLLELD SSISYDPKRK AEPGCEIEVD LPIVEKPSSR YASLKELQKV EPTEADPNGQ  1260
LIEESWDYLG NFPSGARSRH VVRTRGGGRP RVRLQKGIRS TPESSRAGIR PAETMTQVLI  1320
NLGEACGQRH ARGPRTLRRR RTEKKVVEEI LPAYLGQNGN QQTALVLPKK RRREEFGINV  1380
ERIGAANNDS NIKAATAFEG SGHKNTNGFR KWEPEYNNVN SRYDVRELTD EDGNDDNGVD  1440
DNDHDSDIYQ EHGQNLGRFV EVDGNDESNR MEDDNDDQDS GSAVGMDYRQ KMDFQDDVRA  1500
VEEVLSVCTQ DLASQNKGLK VLPSRMPKTS FPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018629804.10.0PREDICTED: homeobox-DDT domain protein RLT1 isoform X3
TrEMBLA0A1S3XL250.0A0A1S3XL25_TOBAC; homeobox-DDT domain protein RLT1-like
STRINGXP_009613460.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21422352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1