PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00022g02014.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 536aa    MW: 61182.1 Da    PI: 6.7687
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00022g02014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.9e-06155174525
                               --SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                C++f + G+Ck G +C+++H
  Peinf101Scf00022g02014.1 155 ACHYFNK-GFCKNGTSCRYSH 174
                               7******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.84150177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5152175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5164411.642204286IPR025605OST-HTH/LOTUS domain
PfamPF128722.2E-13204282IPR025605OST-HTH/LOTUS domain
PROSITE profilePS5010210.275309397IPR000504RNA recognition motif domain
SMARTSM003602.4E-4310393IPR000504RNA recognition motif domain
CDDcd124586.14E-35311393No hitNo description
SuperFamilySSF549282.58E-10320405IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3307.6E-10320403IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MDTFEASKVL HERILKVEPE HVTRKIIGYI YLQDYPDQEM IRLALGPDTL IHNVIRKAKD  60
ALKLNSTSAF SNPLSPSLCP APIADHIRQF THFPPLSHLT KMPYSGYEPQ QQSLQFEEAS  120
DFENYNYPSD YYYPEEAFIR RSRNSPSPLK VPVKACHYFN KGFCKNGTSC RYSHAHPFPE  180
SYPHMIDPNF CENGGEDQVL SPGSLEKLEL EITELLKSQK GHPVSIASLP MMYYEKYGRT  240
LQAEGYLTES QRHGKGGYNL TKLLARLKII RLIERPHGQH SVILAEDAAK YIDIRGERSD  300
PGPIVSGSRQ IYLTFPAEST FTEEDVSDYF NIAYFSDTLV FVSSTFGPVQ DVRIPCQQRR  360
MFGFVTFYNA DTVKMVLSTG NPHYVCGARV LVKPYREKSK LSERRHQEML ESPLCYHLQH  420
ADIDFELQER MNSSRLLRKR LMEEHALELE TRRLAQLQLS QKSIASQYFG PPMDEIKISQ  480
AEHFSHPLDV QNSGSSDEEN PKHSGTHFAD KESNQRINLP DSPFASAVTS SNSAVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264290.10.0PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X1
RefseqXP_019264291.10.0PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X1
TrEMBLA0A314L4X60.0A0A314L4X6_NICAT; Zinc finger ccch domain-containing protein 18
STRINGXP_009791403.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA341822