PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00019g08037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | AP2 | ||||||||
Protein Properties | Length: 718aa MW: 81760.7 Da PI: 7.7075 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.6e-20 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f tae+Aa+a+++a+ +++g Peinf101Scf00019g08037.1 115 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAARAYDKAAIEFRG 164 59*******.**********82....48************************998 PP | |||||||
2 | AP2 | 62.4 | 9.6e-20 | 344 | 393 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f tae+Aa+a+++a+ +++g Peinf101Scf00019g08037.1 344 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAARAYDKAAIEFRG 393 59*******.**********82....48************************998 PP | |||||||
3 | AP2 | 62.4 | 9.6e-20 | 580 | 629 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f tae+Aa+a+++a+ +++g Peinf101Scf00019g08037.1 580 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEDAARAYDKAAIEFRG 629 59*******.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.5E-37 | 115 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.698 | 115 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-13 | 115 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-21 | 115 | 172 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.06E-32 | 115 | 171 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.4E-31 | 115 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 138 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-37 | 344 | 407 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-13 | 344 | 393 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-21 | 344 | 401 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.06E-32 | 344 | 400 | No hit | No description |
PROSITE profile | PS51032 | 24.698 | 344 | 401 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-31 | 344 | 401 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-37 | 580 | 643 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.06E-32 | 580 | 636 | No hit | No description |
Pfam | PF00847 | 2.3E-13 | 580 | 629 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.698 | 580 | 637 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-21 | 580 | 638 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-31 | 580 | 637 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MQRSITKRTK QNETTSINNN ILQPKLTNEQ EFSIMVAALT NVITGTYNDV TQPFQFGTPS 60 TSMSSTFEPP MFRVPTEPEP CQFCKIKGCL GCNYFGTTTE ENKITKIVGK KKKKNYRGVR 120 QRPWGKWAAE IRDPRRAARV WLGTFNTAED AARAYDKAAI EFRGPRAKIN FSFADYTSIL 180 NQSNSSMSHQ KKQEVQLQQG YTNFGTSKEE EEIWDQLILS DNDIQDLSML DFNVTKRAKQ 240 DETISINNNI SQPKLTNEQE YSIMVAALTN VITGTYNDET QPFQFGTPST SMSSTFEPPM 300 FRVPTEPEPC QFCKIKGCLG CNYFGSTTEE NKITKIVGKK KKKNYRGVRQ RPWGKWAAEI 360 RDPRRAARVW LGTFNTAEDA ARAYDKAAIE FRGPRAKINF SFADYTSILN QSNSSMSHQN 420 KQEVQLQQGY TNFCTTSQEE EEIWDQLILS DNDIQDLRML DFNCETSDFA GRNTKQEETT 480 TINNNILQPK LTDEQEFSIM VAALTNVITG TYNDVTQPFQ FVTPSTSMSS TFEPPMFCVP 540 TEPEPCQFCK IKGCLGCNYF GSTTEENKIT KIVGKKKKKN YRGVRQRPWG KWAAEIRDPR 600 RAARVWLGTF NTAEDAARAY DKAAIEFRGP RAKINFSFED YTSIQQQNIS ISANVSPQKQ 660 QEPIVQLQHG INTDHFGTGK LEEEFWDQLL SDNEIQDLSM MDFNGETTNS VGRNAHSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-23 | 112 | 636 | 2 | 62 | ATERF1 |
3gcc_A | 4e-23 | 112 | 636 | 2 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 573 | 579 | GKKKKKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274022 | 3e-76 | AB274022.1 Nicotiana tabacum WRAF2 mRNA for wound-responsive AP2 like factor 2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9SZ06 | 4e-35 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
STRING | XP_009762423.1 | 1e-104 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 4e-29 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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