PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00013g13014.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 351aa    MW: 40209.2 Da    PI: 4.908
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00013g13014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28958150
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                              k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s
  Peinf101Scf00013g13014.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58
                              68***********************************************8 PP
2K-box21.51e-08115200187
                     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                               yq+ss+ +  +++ e+ qqe+ + k ++e ++r++R + G+  e  s+ e q  e+ L++ lk++ ++K ++l e+ +  q++  
  Peinf101Scf00013g13014.1 115 YQASSSPASVDSQIEEFQQEILRYKTQLEDMERQLRMYEGDMCEITSVCEAQYREEILQETLKQVQARK-QVLEENYNSPQEQTT 198
                               6777788889999******************************************************99.566666666665555 PP

                     K-box  86 el 87 
                                +
  Peinf101Scf00013g13014.1 199 TQ 200
                               54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-27269IPR002100Transcription factor, MADS-box
CDDcd002652.98E-35258No hitNo description
PRINTSPR004041.5E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-253859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.20.1170.108.7E-597202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN  60
KRFVLYHELI FMSDIQLSLE YSISLSQIIH SCFSFSIGHL QRALAKLKSE TDRTYQASSS  120
PASVDSQIEE FQQEILRYKT QLEDMERQLR MYEGDMCEIT SVCEAQYREE ILQETLKQVQ  180
ARKQVLEENY NSPQEQTTTQ QEMDFPAQNV NVVNNVATSD SITNTSNTFM DWVPHSQRDP  240
HVQILNFLDS NGLLPFRDEA DQRMDSMLPP TLTQLHNPNV SAVADHLSPN NRFENDPPRP  300
TSFEGIIDVN NAPWAPLYPT GNDPFPVSQP RERAMLELFL SQLTPVNQDH I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A7e-15258157Myocyte-specific enhancer factor 2A
3mu6_B7e-15258157Myocyte-specific enhancer factor 2A
3mu6_C7e-15258157Myocyte-specific enhancer factor 2A
3mu6_D7e-15258157Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754438e-78HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262549.10.0PREDICTED: agamous-like MADS-box protein AGL104
TrEMBLA0A314L9F10.0A0A314L9F1_NICAT; Agamous-like mads-box protein agl104
STRINGXP_009790826.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61831925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.17e-45AGAMOUS-like 104