PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00013g06013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 20804.5 Da PI: 5.9371 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.2 | 3.5e-30 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlrr+C+++C+l+ ++ p +q +++ +v k+FG+s ++++++a+pe++r+++++sl++eA+ r+ +Pv Gavg++ Peinf101Scf00013g06013.1 4 SCNGCRVLRRRCSDNCTLRACLdglddPRAQGNATLFVSKFFGRSDLMSFISAVPENRRPALFKSLLFEACGRTVNPVTGAVGLL 88 6************************************************************************************ PP DUF260 81 lklqqqleqlkaelallk 98 ++++++++q+++e++l++ Peinf101Scf00013g06013.1 89 STGNWHVCQKAVETVLAG 106 ************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.324 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-26 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
NKMSCNGCRV LRRRCSDNCT LRACLDGLDD PRAQGNATLF VSKFFGRSDL MSFISAVPEN 60 RRPALFKSLL FEACGRTVNP VTGAVGLLST GNWHVCQKAV ETVLAGGNLR PVFSGILTPP 120 YTNSDDVSES FRGAWNKSES FVDASGPNFM DASNPWIGSE WSLCSETELS EVSLGLDSGN 180 GLKEPKLLNL FV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 3e-54 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019224836.1 | 1e-99 | PREDICTED: LOB domain-containing protein 38-like isoform X1 | ||||
Swissprot | Q9SN23 | 3e-54 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A314KWD1 | 3e-98 | A0A314KWD1_NICAT; Lob domain-containing protein 38 | ||||
STRING | XP_009783238.1 | 1e-96 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-56 | LOB domain-containing protein 38 |