PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00001g29006.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

GRAS

Protein Properties

Length: 742aa MW: 83484.6 Da PI: 6.4746

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00001g29006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	387.1	2e-118	370	739	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 ++ L+ cA+av+++d + a+++L+++++++sp gd mqRla+yf+++L+ar+a+s++++y al + +ts +++l+ ++lf Peinf101Scf00001g29006.1 370 RTILTLCAQAVAADDRRTANEFLKQIRQNSSPMGDGMQRLAHYFANGLEARMAGSGTQIYTALISMPTS---AADVLKGYQLFLA 451 67899********************************************************999998...89******* PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 ++P+ k+s++ N++I++ +e++++vHiiDf+i++G+QWp+++q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++A Peinf101Scf00001g29006.1 452 ACPFRKLSNFFSNKTIMNLAEKASTVHIIDFGIMYGFQWPCFIQRLSSRPGGPPKLRITGIDFPSPGfrPAERVEETGKRLANYA 536 **************************************************************9************** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 e+++vpfef++ +a+++e++++e+L++k++E+l+Vn+ ++l +llde+v ++s+rd+vL+l+++l+P+v++ + n++ F Peinf101Scf00001g29006.1 537 ESFKVPFEFKA-IAQKWETIKVEDLNIKKDEVLVVNCLYRLRNLLDETVVVDSPRDKVLNLIRKLNPDVFIQGIVNGAFNAPFFI 620 *******.7******************************************************************** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 +rf eal +ys+lfd+lea++p+e ++r+ +E+ +lg e++nv+ace aer+er et+++W+ r +aGF+++pl+e+++ a+ Peinf101Scf00001g29006.1 621 TRFREALFHYSSLFDMLEANIPPEIHDRMLIEKIILGHEAMNVIACEAAERIERPETYKQWQVRNIRAGFRQLPLNEDIMRIARE 705 ********************************************************************************* PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ +++d + ++ + ++l++gWk+r ++++S W+ Peinf101Scf00001g29006.1 706 RVKVHHKD-FVIDVDGHWLLQGWKGRIVFALSTWK 739 **77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.748	343	720	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-116	370	739	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MVMDRNYKGL YEATPAIKLR DEGLSFFPDL NRINNLRVTD TLVQRNHVAA PEFQPDPKPD 60 VLVPSAVDNS HEDYDFSDVV LKYISEMLME EDIEEKACMF QESAALQAAE RSFYDVIGEK 120 YPPSSNQKLP DLGQNGSYAG DYSYDYSCVS DVSDGLLCPN WKPDLGDGDS SHPEHVPVDV 180 ALPSTSQSSH SSSSSSGTIT DVHLDSPVSS LRIPDIFNDS ESIMQFKKGV EEASKFLPTG 240 NSLLLDVKYN VVGKEDNDNR KDAVVKVENN GKQQSPEGSR GKKNIHHHDI DAVEERSTKQ 300 SAVFSESTVR SEMFDKVLLC SGGKNESALR EAWKIASSKN APEDDLPKGP NGRKSRRKKQ 360 GGKRDVVDLR TILTLCAQAV AADDRRTANE FLKQIRQNSS PMGDGMQRLA HYFANGLEAR 420 MAGSGTQIYT ALISMPTSAA DVLKGYQLFL AACPFRKLSN FFSNKTIMNL AEKASTVHII 480 DFGIMYGFQW PCFIQRLSSR PGGPPKLRIT GIDFPSPGFR PAERVEETGK RLANYAESFK 540 VPFEFKAIAQ KWETIKVEDL NIKKDEVLVV NCLYRLRNLL DETVVVDSPR DKVLNLIRKL 600 NPDVFIQGIV NGAFNAPFFI TRFREALFHY SSLFDMLEAN IPPEIHDRML IEKIILGHEA 660 MNVIACEAAE RIERPETYKQ WQVRNIRAGF RQLPLNEDIM RIARERVKVH HKDFVIDVDG 720 HWLLQGWKGR IVFALSTWKA AY

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MVMDRNYKGL YEATPAIKLR DEGLSFFPDL NRINNLRVTD TLVQRNHVAA PEFQPDPKPD  60
VLVPSAVDNS HEDYDFSDVV LKYISEMLME EDIEEKACMF QESAALQAAE RSFYDVIGEK  120
YPPSSNQKLP DLGQNGSYAG DYSYDYSCVS DVSDGLLCPN WKPDLGDGDS SHPEHVPVDV  180
ALPSTSQSSH SSSSSSGTIT DVHLDSPVSS LRIPDIFNDS ESIMQFKKGV EEASKFLPTG  240
NSLLLDVKYN VVGKEDNDNR KDAVVKVENN GKQQSPEGSR GKKNIHHHDI DAVEERSTKQ  300
SAVFSESTVR SEMFDKVLLC SGGKNESALR EAWKIASSKN APEDDLPKGP NGRKSRRKKQ  360
GGKRDVVDLR TILTLCAQAV AADDRRTANE FLKQIRQNSS PMGDGMQRLA HYFANGLEAR  420
MAGSGTQIYT ALISMPTSAA DVLKGYQLFL AACPFRKLSN FFSNKTIMNL AEKASTVHII  480
DFGIMYGFQW PCFIQRLSSR PGGPPKLRIT GIDFPSPGFR PAERVEETGK RLANYAESFK  540
VPFEFKAIAQ KWETIKVEDL NIKKDEVLVV NCLYRLRNLL DETVVVDSPR DKVLNLIRKL  600
NPDVFIQGIV NGAFNAPFFI TRFREALFHY SSLFDMLEAN IPPEIHDRML IEKIILGHEA  660
MNVIACEAAE RIERPETYKQ WQVRNIRAGF RQLPLNEDIM RIARERVKVH HKDFVIDVDG  720
HWLLQGWKGR IVFALSTWKA AY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-55	349	738	1	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019241581.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1J6KJ68	0.0	A0A1J6KJ68_NICAT; Scarecrow-like protein 14
STRING	XP_009764081.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]