PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00001g24004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 177aa MW: 20283.1 Da PI: 9.3807 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00059 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H +H Peinf101Scf00001g24004.1 50 FECKTCNRRFSSFQALGGHRASH 72 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.05E-8 | 48 | 118 | No hit | No description |
Pfam | PF13912 | 1.0E-12 | 49 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.263 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.3E-10 | 95 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.912 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MVAPSTKRER EEDNFYSITT MANYLMLLSR QANEHFDKNM NNNSSTSRVF ECKTCNRRFS 60 SFQALGGHRA SHKKPRLMGD LHNLQLFHEL PKRKTHECSI CGLEFAIGQA LGGHMRRHRA 120 VMNDKNVQAP DDQHAPVVKK ANGRRILSLD LNLTPLENDL EFDLRKSNTA PMVDCFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 95 | KRKTH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB000451 | 0.0 | AB000451.1 Petunia x hybrida mRNA for PEThy;ZPT2-5, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009762518.1 | 2e-76 | PREDICTED: zinc finger protein ZAT11-like | ||||
Refseq | XP_016447026.1 | 2e-76 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 8e-42 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | P93713 | 1e-123 | P93713_PETHY; PEThy;ZPT2-5 | ||||
STRING | XP_009762518.1 | 6e-76 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 4e-44 | C2H2 family protein |