PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00001g15019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB | ||||||||
Protein Properties | Length: 882aa MW: 99519.2 Da PI: 5.4331 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.2e-07 | 8 | 36 | 2 | 30 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIart 30 g W Ede+l+ av ++G+++W++I++ Peinf101Scf00001g15019.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSL 36 78************************986 PP | |||||||
2 | Myb_DNA-binding | 32.3 | 2.2e-10 | 39 | 81 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Peinf101Scf00001g15019.1 39 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 81 6*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.0E-5 | 4 | 36 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-8 | 5 | 36 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 12 | 6 | 38 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.064 | 32 | 85 | IPR017930 | Myb domain |
CDD | cd11659 | 6.87E-27 | 38 | 84 | No hit | No description |
SMART | SM00717 | 6.0E-8 | 39 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-10 | 39 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.64E-11 | 39 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.0E-9 | 40 | 88 | No hit | No description |
Pfam | PF11831 | 7.1E-58 | 384 | 626 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 882 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLTEW TREEDEKLLH LAKLMPTQWR 60 TIAPIVGRTP SQCLERYEKL LDAACAKDEN YDPNDDPRKL RPGEIDPNPE SKPARPDPVD 120 MDEDEKEMLS EARARLANTR GKKAKRKARE KQLEEARRLA SLQKRRELKA AGIDARQRKR 180 KRRGIDYNAE IPFEKRPPPG FYDVAEEDRP VEQPKFPTTI EELEGERRVD REARLRKQDV 240 ARNKIAQRQD APTAILHANK LNDPEAVRRR SKLNLPAPQI PDHELEAIAK IGIASDLLGG 300 DELSEGNAAT RALLANYAQT PQHAMTPMRT PQRTPATKQD AIMMEAENQR RLNQSQTPLL 360 GGDNPMLHPS DFSGVTPKKR EVQTPNPLLT PSATPGSSGL TPRIGMTPSR DSYGMTPKGT 420 PMRDELHINE EMDMHNNAKL GQLSSKKELL SGLKSLPQPK NEYQIVVQPA PEENEEPEEK 480 IEEDMSDRIA REKAEEEAKR QALLRKRSKV LQRELPRPPI GSLELIRSSL MRADGEQSSF 540 VPPTLIEQAD EMIRKELLSL LEHDNSKYPL DEKAEKEKKK GVKRKLAAEP LIEDFEEDEL 600 KEADGLIKDE SQFLRVAMGH ESESLDEFVE AHKTTLNDIM YFPSRNAFGL SSVAGNMEKL 660 AALQKEFENV KKKMDDDTKK ATKLEQKIKV LTNGYQMRAG KLWSQIEGTF KQMDTAGTEL 720 ECFQALQKQE QLAASHRINN LWEEVQKQKE LERTLQKRYG DLTSEKEKIQ HLMDEYRIQA 780 QMQEEIAAKN LQVKPLATGS EAVDSSVSSQ CSNAEENSAS ASQSTVMEVS PTDEVHEKPV 840 DTSSEAVDTI VSSQCSNPED NSASASQSVA SETPPTDDPI PS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 770 | 3 | 799 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 182 | KRRELKAAGIDARQRKRKRR |
2 | 176 | 182 | QRKRKRR |
3 | 177 | 182 | RKRKRR |
4 | 578 | 585 | KKGVKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU095496 | 0.0 | EU095496.1 Solanum lycopersicum CDC5-like protein (cdc5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631530.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | M1ATK6 | 0.0 | M1ATK6_SOLTU; Uncharacterized protein | ||||
STRING | XP_009631530.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6139 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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