PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00001g15019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 882aa    MW: 99519.2 Da    PI: 5.4331
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00001g15019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-07836230
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIart 30
                              g W   Ede+l+ av ++G+++W++I++ 
  Peinf101Scf00001g15019.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSL 36
                              78************************986 PP

2Myb_DNA-binding32.32.2e-103981348
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Peinf101Scf00001g15019.1 39 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 81
                              6*****************99.********8..**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.0E-5436IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-8536IPR009057Homeodomain-like
SMARTSM0071712638IPR001005SANT/Myb domain
PROSITE profilePS5129415.0643285IPR017930Myb domain
CDDcd116596.87E-273884No hitNo description
SMARTSM007176.0E-83983IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-103982IPR009057Homeodomain-like
SuperFamilySSF466894.64E-113986IPR009057Homeodomain-like
PfamPF139213.0E-94088No hitNo description
PfamPF118317.1E-58384626IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLTEW TREEDEKLLH LAKLMPTQWR  60
TIAPIVGRTP SQCLERYEKL LDAACAKDEN YDPNDDPRKL RPGEIDPNPE SKPARPDPVD  120
MDEDEKEMLS EARARLANTR GKKAKRKARE KQLEEARRLA SLQKRRELKA AGIDARQRKR  180
KRRGIDYNAE IPFEKRPPPG FYDVAEEDRP VEQPKFPTTI EELEGERRVD REARLRKQDV  240
ARNKIAQRQD APTAILHANK LNDPEAVRRR SKLNLPAPQI PDHELEAIAK IGIASDLLGG  300
DELSEGNAAT RALLANYAQT PQHAMTPMRT PQRTPATKQD AIMMEAENQR RLNQSQTPLL  360
GGDNPMLHPS DFSGVTPKKR EVQTPNPLLT PSATPGSSGL TPRIGMTPSR DSYGMTPKGT  420
PMRDELHINE EMDMHNNAKL GQLSSKKELL SGLKSLPQPK NEYQIVVQPA PEENEEPEEK  480
IEEDMSDRIA REKAEEEAKR QALLRKRSKV LQRELPRPPI GSLELIRSSL MRADGEQSSF  540
VPPTLIEQAD EMIRKELLSL LEHDNSKYPL DEKAEKEKKK GVKRKLAAEP LIEDFEEDEL  600
KEADGLIKDE SQFLRVAMGH ESESLDEFVE AHKTTLNDIM YFPSRNAFGL SSVAGNMEKL  660
AALQKEFENV KKKMDDDTKK ATKLEQKIKV LTNGYQMRAG KLWSQIEGTF KQMDTAGTEL  720
ECFQALQKQE QLAASHRINN LWEEVQKQKE LERTLQKRYG DLTSEKEKIQ HLMDEYRIQA  780
QMQEEIAAKN LQVKPLATGS EAVDSSVSSQ CSNAEENSAS ASQSTVMEVS PTDEVHEKPV  840
DTSSEAVDTI VSSQCSNPED NSASASQSVA SETPPTDDPI PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027703799Cell division cycle 5-like protein
5xjc_L0.027703799Cell division cycle 5-like protein
5yzg_L0.027703799Cell division cycle 5-like protein
5z56_L0.027703799Cell division cycle 5-like protein
5z57_L0.027703799Cell division cycle 5-like protein
5z58_L0.027703799Cell division cycle 5-like protein
6ff4_L0.027703799Cell division cycle 5-like protein
6ff7_L0.027703799Cell division cycle 5-like protein
6icz_L0.027703799Cell division cycle 5-like protein
6id0_L0.027703799Cell division cycle 5-like protein
6id1_L0.027703799Cell division cycle 5-like protein
6qdv_O0.027703799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163182KRRELKAAGIDARQRKRKRR
2176182QRKRKRR
3177182RKRKRR
4578585KKGVKRKL
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0954960.0EU095496.1 Solanum lycopersicum CDC5-like protein (cdc5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631530.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLM1ATK60.0M1ATK6_SOLTU; Uncharacterized protein
STRINGXP_009631530.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]