PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00001g02003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NF-YB | ||||||||
Protein Properties | Length: 163aa MW: 17533.4 Da PI: 5.3196 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 173.8 | 1.8e-54 | 26 | 120 | 1 | 95 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 vreqdr+lPian++rimkk lPanaki+k+ak+tvqecvsefisf+tseasdkcq+ekrktingddl+wal+tlGfedy+eplk+ Peinf101Scf00001g02003.1 26 VREQDRYLPIANIGRIMKKGLPANAKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLIWALGTLGFEDYIEPLKA 110 69*********************************************************************************** PP NF-YB 86 ylkkyreleg 95 yl +yre ++ Peinf101Scf00001g02003.1 111 YLIRYREGDT 120 ******9665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.6E-51 | 23 | 123 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.79E-38 | 29 | 123 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-27 | 32 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.5E-19 | 60 | 78 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 63 | 79 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.5E-19 | 79 | 97 | No hit | No description |
PRINTS | PR00615 | 2.5E-19 | 98 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MSEAPGSPGG GGSHDSGGDR SPQSNVREQD RYLPIANIGR IMKKGLPANA KIAKEAKDTV 60 QECVSEFISF ITSEASDKCQ KEKRKTINGD DLIWALGTLG FEDYIEPLKA YLIRYREGDT 120 KGSARGGDAS ARKDIVGGQL GSSTQFVYDG SFTQGLDYGN SQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 3e-46 | 26 | 117 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 3e-46 | 26 | 117 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 3e-63 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074252.1 | 1e-103 | nuclear transcription factor Y subunit B-10-like | ||||
Refseq | XP_027772469.1 | 1e-103 | nuclear transcription factor Y subunit B-10-like | ||||
Swissprot | Q8VYK4 | 1e-76 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A0V0HI52 | 1e-102 | A0A0V0HI52_SOLCH; Putative ovule protein | ||||
STRING | XP_009771322.1 | 3e-98 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53340.1 | 9e-72 | nuclear factor Y, subunit B10 |
Publications ? help Back to Top | |||
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