PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg13782524g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GATA | ||||||||
Protein Properties | Length: 142aa MW: 15829.6 Da PI: 10.3515 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.8 | 1.7e-19 | 19 | 52 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR gp g+k+LCnaCG++yrk++ Peinf101Ctg13782524g00003.1 19 CTDCKTTKTPLWRLGPLGPKSLCNACGIKYRKNK 52 ********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.573 | 13 | 68 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-12 | 13 | 57 | No hit | No description |
SMART | SM00401 | 2.0E-15 | 13 | 65 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.8E-16 | 17 | 52 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.96E-13 | 18 | 65 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 19 | 44 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.4E-17 | 19 | 52 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MDPTQKEDSS ANDENTKSCT DCKTTKTPLW RLGPLGPKSL CNACGIKYRK NKSFKGVVEK 60 KKNEISCNTT SSDKDKIGNG KDGKLCKELR LRLMMLGKEV VILQRQRSSV MKKPRIYRKK 120 IGEVEQAALL LMALSCGNSV FA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788710.1 | 4e-58 | PREDICTED: GATA transcription factor 17-like | ||||
Refseq | XP_016454370.1 | 4e-58 | PREDICTED: GATA transcription factor 17-like | ||||
TrEMBL | A0A1S3YQX2 | 9e-57 | A0A1S3YQX2_TOBAC; GATA transcription factor 17-like | ||||
TrEMBL | A0A1U7XQE4 | 9e-57 | A0A1U7XQE4_NICSY; GATA transcription factor 17-like | ||||
STRING | XP_009788710.1 | 1e-57 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12750 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 2e-20 | GATA transcription factor 15 |