PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Ctg13741889g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 359aa MW: 40272.5 Da PI: 5.3233

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Ctg13741889g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.9e-19	59	114	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e++F+++++p+ ++r+eL k+lgL+ qVk+WFqN+R+++k Peinf101Ctg13741889g00003.1 59 KKRYHRHTQLQITEMEAFFKECPHPDDKQRKELGKRLGLEPLQVKFWFQNKRTQMK 114 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-22	40	114	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.94E-19	42	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.115	56	116	IPR001356	Homeobox domain
SMART	SM00389	4.1E-17	57	120	IPR001356	Homeobox domain
Pfam	PF00046	4.7E-17	59	114	IPR001356	Homeobox domain
CDD	cd00086	4.24E-17	59	117	No hit	No description
SuperFamily	SSF55961	8.79E-7	239	348	No hit	No description
PROSITE profile	PS50848	17.963	239	359	IPR002913	START domain
Pfam	PF01852	9.2E-14	249	355	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MFQSNMFESH HHLLDMSHKS PENELDLIRD DEFETKSGTD IMENPSGDDQ DPNQRPNKKK 60 RYHRHTQLQI TEMEAFFKEC PHPDDKQRKE LGKRLGLEPL QVKFWFQNKR TQMKAQHERS 120 ENSQLRADNE KLRAENIRYK EALSNATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR 180 ISGIAAKYVG KPMLTYPNLP AVGSTRSLDL GVGSFGPQSG LVGEMYSAGD LLRSVSGPTD 240 ADKPMIIELA VAAMEELIRM AQTGEPLWIT SPENPTETIL SEDEYVRTFP RGIGPKPLGL 300 KSEASRESAV VIMNHINLVE ILMDVNQWTN VFAGLVSRAL TLEVLSTGVA GNYNGALQV

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MFQSNMFESH HHLLDMSHKS PENELDLIRD DEFETKSGTD IMENPSGDDQ DPNQRPNKKK  60
RYHRHTQLQI TEMEAFFKEC PHPDDKQRKE LGKRLGLEPL QVKFWFQNKR TQMKAQHERS  120
ENSQLRADNE KLRAENIRYK EALSNATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPMLTYPNLP AVGSTRSLDL GVGSFGPQSG LVGEMYSAGD LLRSVSGPTD  240
ADKPMIIELA VAAMEELIRM AQTGEPLWIT SPENPTETIL SEDEYVRTFP RGIGPKPLGL  300
KSEASRESAV VIMNHINLVE ILMDVNQWTN VFAGLVSRAL TLEVLSTGVA GNYNGALQV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	2e-44	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019249652.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A1J6IZ03	0.0	A0A1J6IZ03_NICAT; Homeobox-leucine zipper protein meristem l1
STRING	XP_009799795.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13806	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]