PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg13679913g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 139aa MW: 15153 Da PI: 4.7635 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5.3e-12 | 11 | 54 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ e d+ + +a + ++ + +W++Ia+ ++ g+tl+++k+++ Peinf101Ctg13679913g00001.1 11 VWSREQDKAFENALATYPEDsedRWEKIASDVP-GKTLEEVKHHY 54 6********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.4E-10 | 8 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 10 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.87E-12 | 10 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-9 | 11 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.63E-10 | 12 | 58 | No hit | No description |
PROSITE profile | PS50090 | 7.364 | 12 | 58 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MTVDESSGGS VWSREQDKAF ENALATYPED SEDRWEKIAS DVPGKTLEEV KHHYDLLLDD 60 VSRIESGCVP LPCYNSSSDS STSHGGGDEG TGKKSGNYGN SNGESNHGSG KSSRADQERR 120 KGIAWTEDEH RHHRGDGVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-20 | 9 | 77 | 8 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019261040.1 | 2e-69 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_019261041.1 | 2e-69 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 6e-47 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A314LAW1 | 5e-68 | A0A314LAW1_NICAT; Transcription factor myb1r1 | ||||
STRING | XP_009770756.1 | 2e-68 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4149 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 3e-39 | MYB family protein |
Publications ? help Back to Top | |||
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