PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Ctg13617702g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 272aa MW: 30499.5 Da PI: 8.8987

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Ctg13617702g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	6e-06	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F r nL+ H r+H Peinf101Ctg13617702g00003.1 52 YICEICNQGFQRDQNLQMHRRRH 74 89********************9 PP
2	zf-C2H2	16.9	1.8e-05	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ Peinf101Ctg13617702g00003.1 129 WVCEKCSKGYAVQSDYKAHLKTC 151 58*******************98 PP
3	zf-C2H2	11.1	0.0012	159	177	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ ++ Peinf101Ctg13617702g00003.1 159 DCGRVFSRVESFIEHQDSC 177 9**************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.9E-6	51	74	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.02E-6	51	74	No hit	No description
SMART	SM00355	0.0065	52	74	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.866	52	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS01359	0	54	134	IPR019786	Zinc finger, PHD-type, conserved site
SMART	SM00355	190	93	123	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.5E-5	120	150	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.02E-6	124	149	No hit	No description
SMART	SM00355	60	129	156	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MLENSSSSPV GPSSSSEAFN SNKRKRRPAG TPDPDAEVVT LSPKTLLESD RYICEICNQG 60 FQRDQNLQMH RRRHKVPWKL VKRETLQVKK RVFVCPEPTC LHHDPCHALG DLVGIKKHFR 120 RKHSNNKQWV CEKCSKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDSCTVR 180 TTRPDLQPLQ AGCSSRTASS TSPSSDTNFS SIAPLPRLTM PLPNSHELMN ESPQQHNLEL 240 RLLPSSMACP SRTCDENQLQ APHLNLSIGS SN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-18	127	181	5	59	Zinc finger protein JACKDAW
5b3h_F	1e-18	127	181	5	59	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:16813575, ECO:0000269\|PubMed:18259878, ECO:0000269\|PubMed:24039602, ECO:0000269\|PubMed:9210330}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009610524.1	1e-167	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Refseq	XP_009775158.1	1e-167	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Refseq	XP_016487511.1	1e-167	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Swissprot	F4IPE3	1e-115	IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBL	A0A1S4BFA8	1e-165	A0A1S4BFA8_TOBAC; protein SHOOT GRAVITROPISM 5-like
TrEMBL	A0A1U7W950	1e-165	A0A1U7W950_NICSY; protein SHOOT GRAVITROPISM 5-like
STRING	XP_009775158.1	1e-166	(Nicotiana sylvestris)
STRING	XP_009610524.1	1e-166	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1022	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-111	indeterminate(ID)-domain 14

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim JY,Ryu JY,Baek K,Park CM High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis. New Phytol., 2016. 209(1): p. 265-79 [PMID:26256266] Ryu JY,Kim JY,Park CM Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1093715 [PMID:26452406] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128] Shi H, et al. Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17. J. Pineal Res., 2018. 65(2): p. e12494 [PMID:29607541]