PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg13469878g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 218aa    MW: 24100.4 Da    PI: 4.5072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg13469878g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.9e-182878256
                          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                 +y+GVr +k +g++v+eIr p++   r r++lg+++tae+Aa+a +aa  +l+ge
  Peinf101Ctg13469878g00001.1 28 KYRGVRKRK-WGKYVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRGE 78
                                 8*****999.**********933...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.16E-292787No hitNo description
SMARTSM003803.9E-342891IPR001471AP2/ERF domain
PROSITE profilePS5103221.5092885IPR001471AP2/ERF domain
PfamPF008471.5E-102878IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-202886IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-292886IPR001471AP2/ERF domain
PRINTSPR003676.3E-102940IPR001471AP2/ERF domain
PRINTSPR003676.3E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVKPERQTCH QDSCTLAQSS SSSSSSAKYR GVRKRKWGKY VSEIRLPNSR ERIWLGSYDT  60
AEKAARAFDA ALFCLRGETA KFNFPNNPPD ILNGRSMTPA EIQVAAAQYA NTDTDAGVPI  120
SNWNPRDNSD PSSSLSSSSE MFRAESPSVS VSGGVVQETE KTEMALENGF VDMFSSMGTT  180
NNVYDFGIFP GFDDFSGDYY VPPMPNVDTV EENYHNYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-182386973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624342.11e-104PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ84QC22e-53ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1S3XUX51e-103A0A1S3XUX5_TOBAC; ethylene-responsive transcription factor ERF017-like
STRINGXP_009624342.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]