PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg13452108g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 171aa    MW: 18887.6 Da    PI: 10.8506
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg13452108g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.6e-1996129134
                         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                  C++C  tkTplWR+gp g+ktLCnaCG++yr+ +
  Peinf101Ctg13452108g00001.1  96 CTHCEITKTPLWREGPLGPKTLCNACGVRYRSGR 129
                                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.19E-1588152No hitNo description
SMARTSM004016.2E-1690140IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.0794126IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-1595127IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.73E-1395142No hitNo description
PROSITE patternPS00344096121IPR000679Zinc finger, GATA-type
PfamPF003208.5E-1796130IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
NELSEAQGTV SFQTQSPVSV LEQSSSCFDG KSISFKSATK RRRSKRAQSS TLSPWLLMAP  60
ISCAAFKSKK NSDAKKGKEK KRRNLSQLSG ASVKKCTHCE ITKTPLWREG PLGPKTLCNA  120
CGVRYRSGRL FPEYRPASSP TFVPSLHSNS HRKVTEMRKK APTELEFCSS G
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241099.18e-77PREDICTED: GATA transcription factor 11-like
SwissprotQ6DBP81e-41GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A1J6K3R72e-75A0A1J6K3R7_NICAT; Gata transcription factor 11
STRINGXP_009774660.16e-76(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-39GATA transcription factor 11