PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg13381308g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | LBD | ||||||||
Protein Properties | Length: 85aa MW: 9372.57 Da PI: 4.0837 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 54.2 | 4.3e-17 | 2 | 53 | 49 | 100 |
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e Peinf101Ctg13381308g00002.1 2 LPEYQRADAVSSMVYEANARLRDPVYGSAGAICQLQKQVNELQAQLAKTQAE 53 78899*******************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.431 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-15 | 2 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Gene3D | G3DSA:1.20.58.60 | 2.0E-4 | 6 | 71 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
ELPEYQRADA VSSMVYEANA RLRDPVYGSA GAICQLQKQV NELQAQLAKT QAELVNIQCQ 60 QANIMALVYM EMGQSPPTSP EQSLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-16 | 1 | 61 | 58 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-16 | 1 | 61 | 58 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015079078.1 | 7e-52 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-27 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 4e-27 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | M1AC13 | 1e-49 | M1AC13_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g075330.1.1 | 2e-51 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-30 | LOB domain-containing protein 1 |