PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg13350858g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 104aa MW: 11998.3 Da PI: 5.1853 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36 | 1.7e-11 | 12 | 54 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwq 45 WT+eEd+++ ++ + + g+ +W +Ia+ ++ g++l+++++++ Peinf101Ctg13350858g00001.1 12 WTKEEDKIFENGLAIYSGDdnQWMKIAAALP-GKSLEEIIHHYE 54 *******************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.031 | 1 | 61 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-6 | 4 | 54 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-8 | 8 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.48E-12 | 10 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-8 | 12 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-8 | 12 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MSTDQTCNGS FWTKEEDKIF ENGLAIYSGD DNQWMKIAAA LPGKSLEEII HHYELLVEDV 60 NAIEAGNVPL PQYRRMQNLS HHKSRVSKTD VERRRGVAWT EEEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-17 | 8 | 74 | 7 | 74 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444771.1 | 5e-51 | PREDICTED: uncharacterized protein LOC107770029 | ||||
Swissprot | Q9FNN6 | 3e-24 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A1S3XXU3 | 1e-49 | A0A1S3XXU3_TOBAC; uncharacterized protein LOC107770029 | ||||
STRING | XP_009609269.1 | 8e-50 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4454 | 13 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-26 | MYB family protein |
Publications ? help Back to Top | |||
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