PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Ctg13096502g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 19017.4 Da PI: 6.0334 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.6 | 6.9e-23 | 3 | 51 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 +ien sn qvtfskRr+g++KKA+ELS+LC+aeva++ f+++ +k+y + Peinf101Ctg13096502g00001.1 3 KIENASNLQVTFSKRREGLFKKASELSTLCGAEVAILAFAPNsNKVYSF 51 79*************************************9853788877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.357 | 1 | 45 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-21 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-23 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-24 | 3 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-6 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-6 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
MAKIENASNL QVTFSKRREG LFKKASELST LCGAEVAILA FAPNSNKVYS FGHPCANEIM 60 DRYLARNPPK DETNNNNVNN ELIEAFRNSS IIDITNELNQ KEHELEMERK RGEALQAVRK 120 SKEACQHNWW EAPLKKLNYD QVQQVKEALE ELHYIVESEA EHQKM |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557539.1 | 2e-54 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_019242819.1 | 1e-54 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1J6INK3 | 3e-53 | A0A1J6INK3_NICAT; Agamous-like mads-box protein agl62 | ||||
STRING | XP_010557539.1 | 9e-54 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-42 | AGAMOUS-like 62 |