PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01194034G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRAS | ||||||||
Protein Properties | Length: 158aa MW: 16726.9 Da PI: 5.3077 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 45.3 | 1.5e-14 | 78 | 150 | 2 | 74 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 +lLl+cAe v+ ++l +a++lL ++ elasp g++ +R+aayf AL ar+++s + y+ l+ ++ ++ +s PH01194034G0010 78 LNLLLRCAESVAMDQLPEARNLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLADAQS 150 689**********************************************************999988876554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.527 | 51 | 158 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.2E-12 | 78 | 150 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MLQGVLSRAP GTDAAAAMKA KRGVSASASP EDEERTRGKR QQLHSYAADG VQQGLVVAAG 60 EEEKVEAEAA ETRGLRLLNL LLRCAESVAM DQLPEARNLL PEIAELASPF GSSPERVAAY 120 FGDALCARVL SSYLGAYSPL ALRPLADAQS RRISGAFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-16 | 60 | 158 | 1 | 99 | Protein SCARECROW |
5b3h_D | 2e-16 | 60 | 158 | 1 | 99 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01194034G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120140 | 1e-102 | AK120140.1 Oryza sativa Japonica Group cDNA clone:J013027P17, full insert sequence. | |||
GenBank | AP003866 | 1e-102 | AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07. | |||
GenBank | AP014963 | 1e-102 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 1e-102 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200232.1 | 3e-60 | scarecrow-like protein 23 isoform X1 | ||||
Swissprot | Q9FHZ1 | 2e-24 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A3B6DAG0 | 1e-60 | A0A3B6DAG0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453B9C0 | 1e-60 | A0A453B9C0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2BS_015167E00.1 | 4e-61 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 2e-22 | GRAS family protein |
Publications ? help Back to Top | |||
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