PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01160280G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | B3 | ||||||||
Protein Properties | Length: 153aa MW: 17299.9 Da PI: 10.3713 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36 | 1.2e-11 | 87 | 153 | 4 | 73 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 + +++ +l+++ +++ + ++++g++ +++tl+ +s rsW+v++ r ++++GWkeF+++n+ PH01160280G0010 87 KNITARALSHN-FTIGRFVCASNGIPASCTITLKTSAQSKRSWKVTF--RTANTYSYFKSGWKEFCRDNK 153 55667777777.*************999988888888999*******..77777789***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.3E-12 | 79 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-9 | 83 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.6E-9 | 89 | 153 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.841 | 115 | 153 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MVFTVKVFEL SGCEKEYCDA APSVHIADEK ALSDMPQEKN KQPEVPLIGR KRNRKSECAS 60 RAGDKKPECS PTYMNKKKKA PRHLITKNIT ARALSHNFTI GRFVCASNGI PASCTITLKT 120 SAQSKRSWKV TFRTANTYSY FKSGWKEFCR DNK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01160280G0010 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |