PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01153193G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Trihelix | ||||||||
Protein Properties | Length: 158aa MW: 17922.3 Da PI: 4.4635 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.8 | 7.6e-15 | 1 | 39 | 48 | 87 |
trihelix 48 kqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a PH01153193G0010 1 KRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 39 69*********************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.1E-8 | 2 | 40 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL YRNKAALNST SGGGGGGRQG 60 GHGCGADLAY GAAAPAAQDI MKEMMEQRQP QVQQQQAAIN SYNRMDGGAD SDNMDEDEDE 120 DEDYDDEDDD DDVDGNKMQY EIQFQRQQQQ PPQHHNVV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01153193G0010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354426 | 1e-65 | AK354426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1007E05. | |||
GenBank | AK361507 | 1e-65 | AK361507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142F04. | |||
GenBank | AK372713 | 1e-65 | AK372713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010E21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698336.1 | 6e-29 | LOW QUALITY PROTEIN: trihelix transcription factor GTL1 | ||||
TrEMBL | M8A4E9 | 9e-32 | M8A4E9_TRIUA; Trihelix transcription factor GT-2 | ||||
STRING | TRIUR3_33328-P1 | 1e-32 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 6e-25 | Trihelix family protein |