PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01149019G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | C3H | ||||||||
Protein Properties | Length: 140aa MW: 15676.3 Da PI: 6.2527 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.5e-08 | 65 | 87 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C ++ ++G CkyG +C ++H+p PH01149019G0010 65 NCAYYVKFGSCKYGMNCEYNHPP 87 5********************97 PP | |||||||
2 | zf-CCCH | 29.2 | 1.6e-09 | 116 | 140 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ++++ C ++ ++G CkyG +CkF+H PH01149019G0010 116 PGEPDCTYYVKFGSCKYGMNCKFNH 140 5789********************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.629 | 60 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.13 | 60 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-6 | 65 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.432 | 115 | 140 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7 | 115 | 140 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.9E-7 | 117 | 140 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-5 | 120 | 140 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MGNSEAKHRA SPITPSSDDS VSSLSMQFAN SARPDDPPNP EPSSGKKQEQ AAEKDEYPRR 60 RGLLNCAYYV KFGSCKYGMN CEYNHPPKAS GRPDPAGEKQ QEQEEAPAEP EYLWRPGEPD 120 CTYYVKFGSC KYGMNCKFNH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01149019G0010 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0A9IRL0 | 2e-27 | A0A0A9IRL0_ARUDO; Uncharacterized protein | ||||
STRING | OPUNC06G15040.1 | 7e-24 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22347 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.2 | 5e-17 | zinc finger nuclease 3 |