PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01094017G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 17654.7 Da PI: 11.1957 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.1 | 1.7e-21 | 49 | 97 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp + +r++lg+fgtaeeAa+a++aa+++++g PH01094017G0010 49 YRGVRRRP-WGKWAAEIRDPA----KaARVWLGTFGTAEEAARAYDAAALRFKG 97 9*******.**********83....36************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-32 | 48 | 106 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-15 | 48 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-34 | 48 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.449 | 48 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-12 | 49 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.90E-18 | 49 | 105 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-22 | 49 | 106 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.0E-12 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MARELPFLST GTVRPARRRK AAAPSATGTV ERGSPRGQGG GEEQARASYR GVRRRPWGKW 60 AAEIRDPAKA ARVWLGTFGT AEEAARAYDA AALRFKGAKA KLNFPSEAAA IAQQHRRHPR 120 QHPTASSSSS SWPPDPDIAP AVTEEFPDLR QYAHILQSGS DAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 49 | 105 | 6 | 63 | ATERF1 |
3gcc_A | 2e-22 | 49 | 105 | 6 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}. | |||||
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01094017G0010 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}. | |||||
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727839 | 4e-59 | KJ727839.1 Zea mays clone pUT5792 AP2-EREBP transcription factor (EREB116) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009390372.1 | 2e-34 | PREDICTED: ethylene-responsive transcription factor ERF113 | ||||
Refseq | XP_016692549.1 | 3e-34 | PREDICTED: ethylene-responsive transcription factor ERF113-like isoform X1 | ||||
Swissprot | Q9FH54 | 1e-28 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
Swissprot | Q9LYU3 | 8e-29 | EF113_ARATH; Ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | A0A218WTV3 | 3e-34 | A0A218WTV3_PUNGR; Uncharacterized protein | ||||
STRING | Gorai.012G125700.1 | 4e-33 | (Gossypium raimondii) | ||||
STRING | XP_008811102.1 | 2e-33 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 2e-23 | related to AP2 6 |