PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01013505G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 278aa    MW: 31672.2 Da    PI: 7.7488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01013505G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15.3e-21138239188
                      EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                      f+k lt sd++++g +++p++ ae+                ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+
  PH01013505G0010 138 FCKNLTASDTSTHGGFSVPRRAAERLfpqllieyvldpqdySMQPPN-QELIVRDLQDNLWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDS 230
                      89*********************999*************99555555.49******************************************** PP

                      EEEEE-SSS CS
               B3  80 vvFkldgrs 88 
                      v+F +  ++
  PH01013505G0010 231 VLFIRCCND 239
                      ***866554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.55E-37128256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-30131237IPR015300DNA-binding pseudobarrel domain
CDDcd100174.25E-19137249No hitNo description
PfamPF023628.8E-19138236IPR003340B3 DNA binding domain
SMARTSM010191.9E-16138249IPR003340B3 DNA binding domain
PROSITE profilePS5086310.391138251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MQVLSVIPLG AKKVINSELW HACAGPLVCL PQQGSLVYYF AQGHSEQCKL RLDPWNAEVF  60
LWQVAATTRK IPNSHIPNYP NLPSQLLCQV HNITLHADKD TDEIYAQMTL QPVNSESDVF  120
PIPTLGTYTK SKNPAEYFCK NLTASDTSTH GGFSVPRRAA ERLFPQLLIE YVLDPQDYSM  180
QPPNQELIVR DLQDNLWTFR HIYRGQPKRH LLTTGWSLFV GAKRLKAGDS VLFIRCCNDY  240
EHLCFTLYNI FITSNTHFEN PGSATAREMG MRQRPFPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1131223548246Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01013505G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712921e-109AB071292.1 Oryza sativa OsMP mRNA for Arabidopsis Monopteros-like protein, complete cds.
GenBankAK1031051e-109AK103105.1 Oryza sativa Japonica Group cDNA clone:J033118O21, full insert sequence.
GenBankAK1034521e-109AK103452.1 Oryza sativa Japonica Group cDNA clone:J033129I11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881052.11e-128auxin response factor 11-like isoform X1
SwissprotQ01K261e-129ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9831e-129ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A0P0WG281e-128A0A0P0WG28_ORYSJ; Auxin response factor (Fragment)
TrEMBLA0A3L6PYC81e-128A0A3L6PYC8_PANMI; Auxin response factor
STRINGLPERR04G24160.11e-128(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-110ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]