PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01007618G0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | LSD | ||||||||
Protein Properties | Length: 128aa MW: 13373.2 Da PI: 9.2513 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 27.3 | 5.9e-09 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC tlL Y GA+++RC+ C+ V PH01007618G0020 6 CSGCPTLLVYNSGATNIRCSRCNRV 30 **********************966 PP | |||||||
2 | zf-LSD1 | 22.1 | 2.6e-07 | 43 | 67 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+ P+ A+ V C+ C V PH01007618G0020 43 CGQCRTTLMHPPAASTVECPTCSYV 67 **********************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.5E-10 | 4 | 31 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.2E-9 | 6 | 28 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.9E-7 | 40 | 68 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.0E-8 | 43 | 67 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MSELICSGCP TLLVYNSGAT NIRCSRCNRV NSTRVNQIGH LTCGQCRTTL MHPPAASTVE 60 CPTCSYVNPV RNNSARGTAA GQGASGSARS APPDARPQTV LVENPKTLDE KGKLVSNVVV 120 GVTSWKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01007618G0020 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120454 | 1e-31 | AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence. | |||
GenBank | CT830765 | 1e-31 | CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819949.1 | 4e-57 | protein LOL4-like isoform X1 | ||||
Refseq | XP_025819950.1 | 4e-57 | protein LOL4-like isoform X1 | ||||
Refseq | XP_025819951.1 | 4e-57 | protein LOL4-like isoform X2 | ||||
Swissprot | Q84UR0 | 3e-55 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A2T7D318 | 8e-56 | A0A2T7D318_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D360 | 1e-55 | A0A2T7D360_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8IEV3 | 1e-55 | A0A2T8IEV3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8IEW4 | 8e-56 | A0A2T8IEW4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PMF8 | 8e-56 | A0A3L6PMF8_PANMI; Protein LOL4-like isoform X2 | ||||
STRING | Pavir.Fb00070.1.p | 4e-56 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-24 | LSD family protein |
Publications ? help Back to Top | |||
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