PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01007612G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 673aa    MW: 74765 Da    PI: 6.0014
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01007612G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.59e-22122222198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++aee+       ++++ +  +l+ +d++ ++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + 
  PH01007612G0010 122 FCKTLTASDTSTHGGFSVLRRHAEEClppldmtQNPPWQ--ELVAKDLHANEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RG 211
                      99****************************986555545..8************************************************..34 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++ l+v+v+r
  PH01007612G0010 212 ENGDLRVGVRR 222
                      88889***997 PP
2Auxin_resp110.12.3e-36248330183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+ vGmRfkm+fe+++++err+sGt++gv  ++++ W +S WrsLk
  PH01007612G0010 248 ASHAISTGTLFSVFYKPRTSRSEFIVSVNKYLEAKNHKMNVGMRFKMRFEGDEAPERRFSGTIIGVGSMSTSPWADSDWRSLK 330
                      789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-43112251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-40118237IPR015300DNA-binding pseudobarrel domain
CDDcd100174.77E-20120222No hitNo description
PfamPF023621.4E-19122222IPR003340B3 DNA binding domain
PROSITE profilePS5086310.729122224IPR003340B3 DNA binding domain
SMARTSM010191.3E-20122224IPR003340B3 DNA binding domain
PfamPF065071.8E-34248330IPR010525Auxin response factor
PfamPF023092.2E-5531577IPR033389AUX/IAA domain
PROSITE profilePS5174524.437541634IPR000270PB1 domain
SuperFamilySSF542771.05E-11544619No hitNo description
PfamPF023093.5E-7588632IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MANSGTAGGS GSSSDALYRE LWHACAGPLV TVPCQGERVY YFPQGHMEQL EASTDQQLDQ  60
HLPLFNLPSK ILCKVMNVEL RAETDSDEVY AQIMLQPEAD QSEPTSPDPE PHEPERCNVH  120
SFCKTLTASD TSTHGGFSVL RRHAEECLPP LDMTQNPPWQ ELVAKDLHAN EWHFRHIFRG  180
QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGDLRVGV RRLMRQLNNM PSSVISSHSM  240
HLGVLATASH AISTGTLFSV FYKPRTSRSE FIVSVNKYLE AKNHKMNVGM RFKMRFEGDE  300
APERRFSGTI IGVGSMSTSP WADSDWRSLK VQWDEPSAVP RPDRVSPWEL EPLVATNQQP  360
PQPPARNKRA RPPASPSIAP ELSPIFGLWK SPAESTQAFS FSGLQRTQEL YPPSPNSIFS  420
SPLNVGFNTK NEMSSLTNNH FYWPMRDTRA DSYSASIHKV PPERKQEPTT AGCRLFGIEI  480
SSAVEAASQV VTVSGVGQDQ PAASVDAESD QLSQPSHVNK SDAPAASSER SPLETQSPQV  540
RSCTKVIMQG MAVGRAVDLT RLHGYDDLHC KLEEMFDIQG ELSASLKKWK VVYTDDEDDM  600
MLVGDDPWPE FCSMVKRIYI YSYEEAKQLT PKAKLPVIGD TIKPSPIQPS PESDMPQSDL  660
DNNAPVTDKD RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.013581360Auxin response factor 1
4ldw_A0.013581360Auxin response factor 1
4ldw_B0.013581360Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01007612G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0700260.0AK070026.1 Oryza sativa Japonica Group cDNA clone:J023036G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625501.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A1D8F0H50.0A0A1D8F0H5_9POAL; Auxin response factor
STRINGORGLA02G0176700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]