PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01007341G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 273aa    MW: 29205 Da    PI: 9.2824
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01007341G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv  v+++G+g+W++++++ g+ R+ k+c++rw +yl
  PH01007341G0010 14 KGPWTPEEDIILVSFVQEHGPGNWRAVPAKTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.79.5e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++l+v++ ++lG++ W++Ia++++ +Rt++++k++w+++l
  PH01007341G0010  67 RGNFSDQEEKLIVHLQALLGNR-WAAIASYLP-NRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129425.291965IPR017930Myb domain
SuperFamilySSF466894.04E-3011108IPR009057Homeodomain-like
SMARTSM007179.0E-141363IPR001005SANT/Myb domain
PfamPF002491.7E-161461IPR001005SANT/Myb domain
CDDcd001671.36E-121661No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129420.8266116IPR017930Myb domain
SMARTSM007172.6E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
CDDcd001671.07E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDIILVSFVQ EHGPGNWRAV PAKTGLMRCS KSCRLRWTNY  60
LRPGIRRGNF SDQEEKLIVH LQALLGNRWA AIASYLPNRT DNDIKNYWNT HLRKKLQRTA  120
ALTAPQPERQ RSPPPGKGQW ERRLQTDINL ARLALREALS VDVGAGPPGL SRGDARITSP  180
ASSESAAYAL SAQNISQMLD GWAPGKAVPA TATPGAAESA SGSSELTECS GSSASNCAAP  240
VLGSSLFGYE SKAMAAAGEE VPLSAIESWA RG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-27141164105C-Myb DNA-Binding Domain
1msf_C2e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01007341G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988920.0FP098892.1 Phyllostachys edulis cDNA clone: bphylf052j22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794825.11e-114transcription factor MYB30-like
SwissprotP813924e-95MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0E0KEB81e-114A0A0E0KEB8_ORYPU; Uncharacterized protein
STRINGOPUNC03G18230.11e-114(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.13e-90myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]