PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01006816G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HB-other
Protein Properties Length: 966aa    MW: 106393 Da    PI: 7.32
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01006816G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.34.6e-071167157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     +++R  ++++ ++ +++lF+ + ++ ++e +e+++ +g+t +qV+ +F  +R++ +k
  PH01006816G0010 11 KKPRDLLNPKSVKSMQSLFAVKDTIGKKETREISAFCGVTVTQVREFFASQRTRVRK 67
                     799***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.086868IPR001356Homeobox domain
SMARTSM003890.00491072IPR001356Homeobox domain
CDDcd000867.22E-41167No hitNo description
Gene3DG3DSA:1.10.10.607.5E-51168IPR009057Homeodomain-like
PfamPF000461.5E-41167IPR001356Homeobox domain
SuperFamilySSF466893.51E-61169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
AAGALSIKIG KKPRDLLNPK SVKSMQSLFA VKDTIGKKET REISAFCGVT VTQVREFFAS  60
QRTRVRKFVH LSREKALRIE ASKAPDNVRS ISTEQAPLDI EAHAQVIEPL RTLGPVEVPQ  120
SSSQPVEVLQ NSLQQAEVQQ NCATPITPTG TMQPTDAKII PDPVQKESKQ DEVAPGVESE  180
DKKFLESIFA LMRKEETFSG QVKLMEWILQ INNITVLSWI SEILRDEVWK SEVDITEEIL  240
ALTEGASEGR KPEPRKTPLL LTASADESNK KSSLQTKSKE RRKVLLVEHP NRKAAGKNVH  300
SARSISTNNS RPLSADDIQK AKMRAMFMQE KYGKVDTGKV IDKPRITENE KPSGLVNSNA  360
SPMPRSPITS ITKQPVDPSP SASNQSTVPL PYKPEIPVSS KLNITSRENF IEKLDSKRVV  420
WQIPPEVWID PSWSVSAGDN SKELEIQTQR NRRERNRREK ETFYASLKDI PLNPKDPWDV  480
EMDFDDSLTP EIPIDQPPDA DTMEVDSVGA TPPNIEVPVE DKQVGSTSSA APAVAAGPNG  540
AASEPDLELL AVLLKNPQLV FALTSNQVDT LPSEQTVALL DMLKQTGLGL SELASWRSEF  600
PTQVKAPNLQ QVHLSNQGNT PSIASTVQQS FSNVVSSLPS QPYASVSALP AQIQTNVPSL  660
PQLVVSINPP TQHVAPMNNL LNRAPVHQHT QSYALVSDPV AVAIHQQPAV NKPTDEVQNI  720
PNPALVHYST PEPNASYASL PWQSSAANVT ITGRNTTPDP WAVRTTTNSF NVASSNSVPY  780
PNQNAYGNQP KQSTYNAYGS TPVSSHSVLL GHGLDRNGYT RTAEYQTAGR DSRPRHSPSP  840
ELGAGRVYGG TQGYILEPSR QWHYGQQNCN PAEPSRQWSS GQQSHNPAEP SRQWTGGQQS  900
YNPSEPSRQW SSVQQSYTPA EPSRSWNSGH QGQNLETSRQ WSLGKQDYYN PSDGRSSYDQ  960
HWRRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451458RRERNRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01006816G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620702.10.0homeobox protein LUMINIDEPENDENS
TrEMBLQ942Z10.0Q942Z1_ORYSJ; Putative flowering-time protein
STRINGORUFI01G46480.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80433034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.29e-53HB-other family protein