PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01006426G0020

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

BES1

Protein Properties

Length: 355aa MW: 37177.1 Da PI: 8.0873

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01006426G0020	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	192.5	1.5e-59	9	154	2	148
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspess 93 g+gr ptw+ErEnn+rRERrRRaiaakiyaGLRa+Gn+ lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ e+a+ +g sas sp+ss PH01006426G0020 9 GGGRVPTWRERENNRRRERRRRAIAAKIYAGLRAYGNFDLPKHCDNNEVLKALCHEAGWTVEPDGTTYRKGCKPPatERADPIGPSASPSPCSS 102 789**********************************************************************9999*********** PP DUF822 94 lqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148 ++ s+++s+ +s +s+ +s + s+s + ++ +sl+p+l++ls++ s PH01006426G0020 103 YHPSPRASYNSSSFPSSGSSSQITLGGSSSFFGGVEG---SSLIPWLRNLSSSGS 154 77766666666666666655555555555554444...799999999987433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.5E-64	9	150	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MTNGGGGVGG GRVPTWRERE NNRRRERRRR AIAAKIYAGL RAYGNFDLPK HCDNNEVLKA 60 LCHEAGWTVE PDGTTYRKGC KPPATERADP IGPSASPSPC SSYHPSPRAS YNSSSFPSSG 120 SSSQITLGGS SSFFGGVEGS SLIPWLRNLS SSGSSHLTSS SKFPVHHHQT YFNGGSISAP 180 VTPPSGSPPR TPRIKTGGWE YPGHVLPPWA DSASYASLPN STPPSPGYKV APDPAWLAGF 240 QISSAGPSSP TYSLVAPNNP FAVFKEVAAN SSRMCTPGQS GTCSPVVGGA PMIHGDVEMI 300 GEAGHEFAFG SGGDGGDKMP GLVKAWEGER IHEECGSDEL ELTLGSSRTR ADHP*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MTNGGGGVGG GRVPTWRERE NNRRRERRRR AIAAKIYAGL RAYGNFDLPK HCDNNEVLKA  60
LCHEAGWTVE PDGTTYRKGC KPPATERADP IGPSASPSPC SSYHPSPRAS YNSSSFPSSG  120
SSSQITLGGS SSFFGGVEGS SLIPWLRNLS SSGSSHLTSS SKFPVHHHQT YFNGGSISAP  180
VTPPSGSPPR TPRIKTGGWE YPGHVLPPWA DSASYASLPN STPPSPGYKV APDPAWLAGF  240
QISSAGPSSP TYSLVAPNNP FAVFKEVAAN SSRMCTPGQS GTCSPVVGGA PMIHGDVEMI  300
GEAGHEFAFG SGGDGGDKMP GLVKAWEGER IHEECGSDEL ELTLGSSRTR ADHP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-23	12	82	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-23	12	82	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-23	12	82	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-23	12	82	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01006426G0020

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101229	2e-97	AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001136786.1	1e-156	BES transcription factor
Swissprot	Q5Z9E5	1e-154	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A3L6DHP0	1e-155	A0A3L6DHP0_MAIZE; Protein BZR1 3
TrEMBL	B4FKI7	1e-155	B4FKI7_MAIZE; BES transcription factor
STRING	GRMZM5G812774_P01	1e-156	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	2e-57	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]