PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01006399G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 515aa    MW: 56840.1 Da    PI: 7.0128
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01006399G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.54.6e-31131184255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtp+LH +Fv+ave+LGG+e+AtPk ++e+m+v gL+++hvkSHLQ+YR+
  PH01006399G0010 131 PRLRWTPNLHMAFVHAVERLGGQERATPKLVREMMNVRGLSIAHVKSHLQMYRS 184
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.347127187IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-28127185IPR009057Homeodomain-like
SuperFamilySSF466892.33E-13130185IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-22131186IPR006447Myb domain, plants
PfamPF002491.8E-7132183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MAGSVERDRE WKKLRSMIAR EEEEMRKVNK EKEVLAEILE DDEKRSTDSK PLDLNEDVDV  60
ESEVGEVGED EDGGDENDDG DSTTDIAGSR NSSTNNISES KKGDNNDGSK SEASGEQRVP  120
SVRQYNRSKL PRLRWTPNLH MAFVHAVERL GGQERATPKL VREMMNVRGL SIAHVKSHLQ  180
MYRSKKLDHD GRQIRGAISS VFSPMDFPLM RGDRRFHDTF LQRAAALSSR SGHGGFFASR  240
NSSGGPEASG HYWLLQHRPS PMQTFDFKNC SFRNQDWAFK QQDMASRKGV KPSSLAIPHF  300
FASSSLRRWP LASAAAGTGE QRLEGSFGYS NESGSRQLSR AMAPAMLAVP GGDHRFPFRW  360
RGADGGNGCY PAISGSAKTR SSDPVVVDEA LDSRLEQQKH LESRAPATPA NEVRGKRPSP  420
EAEDRMPILQ LSLSPTTVDT TTDGTKKRKK NTATSEHETM DYCDKLSISL SLLPPTASMS  480
MQQQEKTTGS SNSSEEAALG QSTLDLTMSI RALE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-16132186357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16132186357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16132186357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16132186357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445449KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01006399G0010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056132e-42AP005613.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09.
GenBankAP0149582e-42AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-42CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234086.10.0uncharacterized protein LOC104583488
TrEMBLI1HZ560.0I1HZ56_BRADI; Uncharacterized protein
STRINGBRADI3G09160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-36G2-like family protein