PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01006140G0010

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 318aa MW: 34492.7 Da PI: 8.7567

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01006140G0010	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.9	5.2e-33	64	204	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+Ptd+el+ e+L+ k++ ++ +++ +i+++d i++++P++Lp v ++ +fF++ +k+y+tg+rk+r+++ PH01006140G0010 64 LPAGVKFDPTDQELL-EHLEGKARPDTrilhplIDE--FIPTIDgengICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdeqg 153 799**********.99*9999888644333..3444444445******.555555677**************74445655 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l PH01006140G0010 154 gETRWHKTGKTRPVFT-NGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 204 5778********.999*******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-38	55	223	IPR003441	NAC domain
PROSITE profile	PS51005	33.262	64	223	IPR003441	NAC domain
Pfam	PF02365	4.2E-15	65	204	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MTWCNSFNDV RAVENNLASA AAVAAAKKQQ ASSHVNLIKT CPACGHGAQY EQQAAATIQD 60 LPGLPAGVKF DPTDQELLEH LEGKARPDTR ILHPLIDEFI PTIDGENGIC YTHPERLPGV 120 GKDGLIRHFF HRPSKAYTTG TRKRRKVHTD EQGGETRWHK TGKTRPVFTN GKLKGYKKIL 180 VLYTNYGKQR KPEKTNWVMH QYHLGSDEEE KDGELVVSKV FYQTQPRQCG GSTAGKDAVV 240 VAGNNKCIAA TADHQHHEGG HGGNNNSVLK EAGIVDFYSP AALIGYNQAA PNNRAAAASA 300 HLMPNFEVHT GGAGFGP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-12	47	204	2	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01006140G0010

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102794	0.0	AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969491.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-126	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	K3XK78	0.0	K3XK78_SETIT; Uncharacterized protein
STRING	Si002301m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3075	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-123	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]