PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01006080G0010

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 441aa MW: 46757.7 Da PI: 4.7071

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01006080G0010	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.4	1.6e-13	239	286	4	51
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k+ +rk++NRe+ArrsR RK a ++ Lee v +L eN++L +l PH01006080G0010 239 EKVKKRKESNRESARRSRSRKAAHLKDLEEQVSQLRVENSSLLGRLAD 286 6999************************************99865544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.2E-12	235	313	No hit	No description
SMART	SM00338	8.2E-15	236	300	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.795	238	285	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.7E-11	239	286	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.0E-10	240	287	No hit	No description
Pfam	PF12498	4.1E-34	307	422	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MERVFSVEEI PDPFWAPPPP PVLPLQPQMI AGGIGGVGLG GGVGGRGGAM NRCPSEWYFQ 60 KFLEETLLDG LAPPAAANPN ASVLYPNPMA EASGGRGYGD EVVEVIPVPV PAPAPAPAVV 120 DPVEYNAMLK RKLDVDLAAV AMWRASGAMR PETSLGYRAL PNSDGSNLGS QNYIGGNGIL 180 VQNKFGGGPS GGLGPYLVQK ADARVKQATS SSSREPSPSD DDDMEGQIDK MGNMNLTEEK 240 VKKRKESNRE SARRSRSRKA AHLKDLEEQV SQLRVENSSL LGRLADASHK YSDAAVHNRV 300 LKADVETLKA KVKMAEETVK RVTGTNQLPQ AISDMPSLRI PFSGSPSDAT TDVSVPIQDN 360 PITYFATATD AGINNSCMPE IDPTFQIEDM IDGALTTGGP ISSMDQTASQ GVTILGHLQR 420 SAPWGSAVLD PNELVNMEML *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MERVFSVEEI PDPFWAPPPP PVLPLQPQMI AGGIGGVGLG GGVGGRGGAM NRCPSEWYFQ  60
KFLEETLLDG LAPPAAANPN ASVLYPNPMA EASGGRGYGD EVVEVIPVPV PAPAPAPAVV  120
DPVEYNAMLK RKLDVDLAAV AMWRASGAMR PETSLGYRAL PNSDGSNLGS QNYIGGNGIL  180
VQNKFGGGPS GGLGPYLVQK ADARVKQATS SSSREPSPSD DDDMEGQIDK MGNMNLTEEK  240
VKKRKESNRE SARRSRSRKA AHLKDLEEQV SQLRVENSSL LGRLADASHK YSDAAVHNRV  300
LKADVETLKA KVKMAEETVK RVTGTNQLPQ AISDMPSLRI PFSGSPSDAT TDVSVPIQDN  360
PITYFATATD AGINNSCMPE IDPTFQIEDM IDGALTTGGP ISSMDQTASQ GVTILGHLQR  420
SAPWGSAVLD PNELVNMEML *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. Involved in the endosperm-specific regulation of storage protein genes (PubMed:15685292). Can activate the expression of genes encoding for the seed storage proteins glutelin, prolamin, globulin and the allergen RAG1. Functions synergistically with DOF3/RPBF to positively regulate quantitatively many seed storage protein genes (PubMed:16798940, PubMed:19473328). Functions synergistically with DOF3/RPBF to positively regulate some metabolic enzymes, such as alanine aminotransferase and pyruvate phosphate dikinase, that are expressed in developing seeds (PubMed:16798940). Functions synergistically with DOF3/RPBF to positively regulate genes that are key players in the development of aleurone layers (PubMed:19473328). Functions synergistically with DOF3/RPBF to positively regulate the glutelin GLUD-1 gene in endosperm of developing seeds (PubMed:18980953). Can activate the expression of the bifunctional lysine-degrading enzyme, lysine ketoglutarate reductase/saccharopine dehydrogenase (LKR/SDH), one of the key regulators determining free lysine content in plants (PubMed:21037241). Functions as a key regulator of starch synthesis in seeds, by direct binding to the promoters of starch-synthesizing genes, such as AGPL3, WAXXY and SBE1 (PubMed:23846875). {ECO:0000269\|PubMed:15685292, ECO:0000269\|PubMed:16798940, ECO:0000269\|PubMed:18980953, ECO:0000269\|PubMed:19473328, ECO:0000269\|PubMed:21037241, ECO:0000269\|PubMed:23846875}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01006080G0010

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981429.1	1e-122	bZIP transcription factor RISBZ2 isoform X1
Refseq	XP_022679227.1	1e-122	bZIP transcription factor RISBZ2 isoform X2
Swissprot	Q6ZLB0	1e-116	RSBZ1_ORYSJ; bZIP transcription factor RISBZ1
TrEMBL	A0A0A9DSQ7	1e-127	A0A0A9DSQ7_ARUDO; Ohp1
STRING	LPERR03G31620.1	1e-122	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	3e-25	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yamamoto MP,Onodera Y,Touno SM,Takaiwa F Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes. Plant Physiol., 2006. 141(4): p. 1694-707 [PMID:16798940] Kawakatsu T,Yamamoto MP,Hirose S,Yano M,Takaiwa F Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm. J. Exp. Bot., 2008. 59(15): p. 4233-45 [PMID:18980953] Kawakatsu T,Yamamoto MP,Touno SM,Yasuda H,Takaiwa F Compensation and interaction between RISBZ1 and RPBF during grain filling in rice. Plant J., 2009. 59(6): p. 908-20 [PMID:19473328] Kawakatsu T,Takaiwa F Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain. Plant Cell Physiol., 2010. 51(12): p. 1964-74 [PMID:21037241] Wang JC,Xu H,Zhu Y,Liu QQ,Cai XL OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm. J. Exp. Bot., 2013. 64(11): p. 3453-66 [PMID:23846875] Chen Y,Sun A,Wang M,Zhu Z,Ouwerkerk PB Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice. Plant Mol. Biol., 2014. 84(6): p. 621-34 [PMID:24282069] Fan J, et al. Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes. J Integr Plant Biol, 2015. 57(6): p. 577-90 [PMID:25319482] Li Y, et al. Phosphate transporter OsPht1;8 in rice plays an important role in phosphorus redistribution from source to sink organs and allocation between embryo and endosperm of seeds. Plant Sci., 2015. 230: p. 23-32 [PMID:25480005]