PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01005978G0070

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GRAS

Protein Properties

Length: 727aa MW: 80385.8 Da PI: 5.6503

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01005978G0070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	337.7	2e-103	345	717	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l+ lL++cA+av++gd + a++lL+++++++sp+gd++qRla++f+e+L+arla+++s++y++l +++ts ++++l+a+kl+ ++ + k+ PH01005978G0070 345 LRALLIHCAQAVATGDRRSANELLKQIKQHSSPRGDATQRLAHCFAEGLEARLAGMGSQVYQSLMAKRTS---VVDNLKAYKLYMAACCFRKVN 435 5789**********************************************************999999...***************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + ++I++av+g +r+Hi+D+++++G+Q+p Llq La+R++gpp++R Tg++ p++g + ++eetg+rL+++A+elgv+f+f++ +a ++ PH01005978G0070 436 FAFSVKTIYNAVAGRSRLHIVDYGVQYGFQFPGLLQWLAAREGGPPEVRFTGIDLPQPGfrPAFQIEETGRRLSNYARELGVSFKFHA-IAAKW 528 ******************************************************999***********************.799 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 e+++ e+L+++p+E+l+Vn++ +l+desv ++s +rd vL+ +++++P+v++ + ++++ Fl+rf eal +ysa fd l+a++pre PH01005978G0070 529 ETIRGEDLNIDPDEVLVVNSQCDFAKLMDESVVTDSpsPRDVVLSNIRKMRPDVFIQFVLNGTYGAPFFLTRFREALFFYSAHFDVLDATIPRE 622 *****************************99988779*************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 ++r +Er +lg+ + nv+acega+r+ et+++W+ r ++aG++++pl+ ++++ ++ +++++ + + v+ ++ +l++gWk+r L+++S PH01005978G0070 623 CDDRLLIERDILGPYALNVIACEGADRVDCPETYKQWQVRNHRAGLRQLPLNPEVVQFVRDKVKNHYHKDFVVDVDHRWLLQGWKGRVLYTMST 716 ***************************************************************888********************** PP GRAS 373 W 373 W PH01005978G0070 717 W 717 * PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.049	319	698	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.0E-101	345	717	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MATTPEEFLR EGFLVDPEPF SPSPFLDLPP TPHGHADAVE DPASSDDLIL PYISRMLMEE 60 DIDDKFFYQY PDHPALLTSQ QRYAQILSSS SSHSATNSGN STALSPSSSS PDAPASANPT 120 SPYDPIELSQ LLQSPPFPDV GLGLADDVDN LFLPGDVAPS AGFQQSPPLY DVDNSYFAGA 180 GQNGSGTGIQ SSAFLNGTDE EAKTIITLPA GDGDQGALAS AFFNGQTDGN IHMLNLAFLK 240 GMEEAKKFLP TNNTLLTARA WRRPRRAART GTTGSGRNSK MMMPEQEENG AREMFDEIMV 300 RGHEIIMKGM EDLRIAMGSE AEKKSRKGTG KAARGSRGAI VVVDLRALLI HCAQAVATGD 360 RRSANELLKQ IKQHSSPRGD ATQRLAHCFA EGLEARLAGM GSQVYQSLMA KRTSVVDNLK 420 AYKLYMAACC FRKVNFAFSV KTIYNAVAGR SRLHIVDYGV QYGFQFPGLL QWLAAREGGP 480 PEVRFTGIDL PQPGFRPAFQ IEETGRRLSN YARELGVSFK FHAIAAKWET IRGEDLNIDP 540 DEVLVVNSQC DFAKLMDESV VTDSPSPRDV VLSNIRKMRP DVFIQFVLNG TYGAPFFLTR 600 FREALFFYSA HFDVLDATIP RECDDRLLIE RDILGPYALN VIACEGADRV DCPETYKQWQ 660 VRNHRAGLRQ LPLNPEVVQF VRDKVKNHYH KDFVVDVDHR WLLQGWKGRV LYTMSTWVAE 720 DTNSIF*

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MATTPEEFLR EGFLVDPEPF SPSPFLDLPP TPHGHADAVE DPASSDDLIL PYISRMLMEE  60
DIDDKFFYQY PDHPALLTSQ QRYAQILSSS SSHSATNSGN STALSPSSSS PDAPASANPT  120
SPYDPIELSQ LLQSPPFPDV GLGLADDVDN LFLPGDVAPS AGFQQSPPLY DVDNSYFAGA  180
GQNGSGTGIQ SSAFLNGTDE EAKTIITLPA GDGDQGALAS AFFNGQTDGN IHMLNLAFLK  240
GMEEAKKFLP TNNTLLTARA WRRPRRAART GTTGSGRNSK MMMPEQEENG AREMFDEIMV  300
RGHEIIMKGM EDLRIAMGSE AEKKSRKGTG KAARGSRGAI VVVDLRALLI HCAQAVATGD  360
RRSANELLKQ IKQHSSPRGD ATQRLAHCFA EGLEARLAGM GSQVYQSLMA KRTSVVDNLK  420
AYKLYMAACC FRKVNFAFSV KTIYNAVAGR SRLHIVDYGV QYGFQFPGLL QWLAAREGGP  480
PEVRFTGIDL PQPGFRPAFQ IEETGRRLSN YARELGVSFK FHAIAAKWET IRGEDLNIDP  540
DEVLVVNSQC DFAKLMDESV VTDSPSPRDV VLSNIRKMRP DVFIQFVLNG TYGAPFFLTR  600
FREALFFYSA HFDVLDATIP RECDDRLLIE RDILGPYALN VIACEGADRV DCPETYKQWQ  660
VRNHRAGLRQ LPLNPEVVQF VRDKVKNHYH KDFVVDVDHR WLLQGWKGRV LYTMSTWVAE  720
DTNSIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-37	351	718	24	378	Protein SCARECROW
5b3h_D	2e-37	351	718	24	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01005978G0070

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564369.1	0.0	scarecrow-like protein 34
TrEMBL	I1HSE9	0.0	I1HSE9_BRADI; Uncharacterized protein
STRING	BRADI2G52227.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-142	GRAS family protein