PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005969G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 396aa    MW: 42400.4 Da    PI: 8.5976
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005969G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.71.9e-133460127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++lC +++++GtCk+G++CkF H++
  PH01005969G0020 34 PGQPLCEYYMKNGTCKFGSNCKFDHPR 60
                     589**********************96 PP
2zf-CCCH34.82.8e-1180105227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++ +tG+Ck+G++CkF+H++
  PH01005969G0020  80 GEKECSYYIKTGHCKFGSTCKFHHPE 105
                      7899********************96 PP
3zf-CCCH39.21.1e-12233259127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tGtCk+G++Ck++H++
  PH01005969G0020 233 PGQPECHYYMKTGTCKFGATCKYHHPQ 259
                      5789*********************97 PP
4zf-CCCH28.82.1e-09282305427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       +C ++ + G+Ck+G++CkF H++
  PH01005969G0020 282 QPCVYYTQHGFCKFGPTCKFDHPM 305
                      69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-73360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.0283361IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-113560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-63661IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-63861IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.80278106IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-478105IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-880105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-681105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-484104IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6232259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018232260IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10234259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5236259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305278306IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-6278305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6281308IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6282305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4283303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAAAAKAAVA TPALSSKFNR GGRTTRTVEY PERPGQPLCE YYMKNGTCKF GSNCKFDHPR  60
EGGSVQPVVL NTSGYPLRPG EKECSYYIKT GHCKFGSTCK FHHPELGVVS ETPSMYPPVQ  120
PSPISSPHPY PPLASWQMGK PLVLPGSFLP GSYPPMMLPS AVIPMQGWNP YISPVNQVTL  180
AGGQQTVQAG QFYGLSHQGP SSAVAYGGHY APLSSSIGPS SSNKQEPVFP ERPGQPECHY  240
YMKTGTCKFG ATCKYHHPQY LSAPKSNCML SPLGLPLRPG DQPCVYYTQH GFCKFGPTCK  300
FDHPMGTLSY SPSVPSLNDV PIAPYPLSFP VAPMAPFASS SDLRPEYILI KESSANTSAS  360
PVTTCGSMSK VYAPHMLIRP PTSTGGFVTS DGGEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005969G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622429.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0D9Y6990.0A0A0D9Y699_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FJL40.0A0A0E0FJL4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MU560.0A0A0E0MU56_ORYRU; Uncharacterized protein
TrEMBLI1NM100.0I1NM10_ORYGL; Uncharacterized protein
STRINGOGLUM01G11340.10.0(Oryza glumipatula)
STRINGORUFI01G10840.10.0(Oryza rufipogon)
STRINGOS01T0257400-010.0(Oryza sativa)
STRINGONIVA01G12440.10.0(Oryza nivara)
STRINGORGLA01G0090000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.34e-99C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]