PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01005828G0060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 35395 Da PI: 5.39 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.6e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l + G +W+++++ g+ R++k+c++rw +yl PH01005828G0060 14 KGPWTAEEDQKLMIFILSNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++l vd+++qlG++ W++Ia+++ gRt++++k++w+++ PH01005828G0060 70 LSEAEEKLVVDLHAQLGNR-WSKIASHLA-GRTDNEIKNHWNTH 111 5899***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-20 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.344 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-25 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-6 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.253 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 64 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-14 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.45E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLMIFIL SNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEAEEKLVVD LHAQLGNRWS KIASHLAGRT DNEIKNHWNT HIKKKLKKMG 120 IDPLTHKPLP QQQQHDQNPP LAGDWPEIQG PPPEQKHPEE EATAETVTDQ HDEELLLRKS 180 PGFCTDEVPM IHPDEIMIPL CDQPPPPPPP PPPPTTTCAA ASAPTTSHST STSTSASSSS 240 SASTSCDEDT LRSIMEWPDT MYLMGLDDMI AALPSTWDDC RVQPAPAPAY EDTFNAYQYQ 300 RNSGAFDQEA WNKLELF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01005828G0060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092606 | 0.0 | FP092606.1 Phyllostachys edulis cDNA clone: bphylf044c24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973482.1 | 1e-123 | myb-related protein 315 | ||||
TrEMBL | K3YIS5 | 1e-122 | K3YIS5_SETIT; Uncharacterized protein | ||||
STRING | Si014144m | 1e-123 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16600.1 | 9e-92 | myb domain protein 43 |