PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005780G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 275aa    MW: 30820 Da    PI: 9.8535
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005780G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57346.21.3e-1494182397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf.kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      fqr w+ +De+ +L +l   ++++g     + + ++  + ++++  ++ +++l +K+r+LK++ +++ kk     +   +keh++  ++lsk +
  PH01005780G0020  94 FQRTWTPDDEVRILEALAAHHQEHGEL--PNSHVLFASLDGRLNKkRFRRRELDDKVRSLKRRHNNDAKK-----DAPPTKEHERCLYHLSKNV 180
                      9************************65..556678888888886516999*****************999.....88899************** PP

           DUF573  96 Wg 97 
                      Wg
  PH01005780G0020 181 WG 182
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.1E-1894182IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAPTLRAKNE KPPERATQKE DGGSSYSSDS DSHKVPPEPE QAKRREARPA EAQSPERKRK  60
RPSAKSPELK KKKANPLDPK RNAPSAEAGK TLPFQRTWTP DDEVRILEAL AAHHQEHGEL  120
PNSHVLFASL DGRLNKKRFR RRELDDKVRS LKRRHNNDAK KDAPPTKEHE RCLYHLSKNV  180
WGDMPKPVDA AGPKSCGGQT NMDAQVPSAG KTFDEMRELY PCLTQELILL VDAEAQPAVL  240
ERVLPSIDDS KAQALELKIM KLKEELTKAI MESV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15872RKRPSAKSPELKKKK
2135153KKRFRRRELDDKVRSLKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005780G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610937.15e-59probable transcription factor At2g01370 isoform X5
RefseqXP_025876326.19e-59probable transcription factor At2g01370 isoform X4
TrEMBLA0A0E0EP937e-58A0A0E0EP93_9ORYZ; Uncharacterized protein
STRINGOMERI09G00020.11e-58(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139691113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.17e-12DNA-binding storekeeper protein-related transcriptional regulator