PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005685G0080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 339aa    MW: 36493.2 Da    PI: 6.4988
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005685G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.8e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd +l + ++++G g+W+++++  g+ R++k+c++rw +yl
  PH01005685G0080 14 RGLWSPEEDVKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61
                     788*******************************************97 PP

2Myb_DNA-binding53.74.7e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +++eE++l+v+++ +lG++ W+ Ia+ ++ gRt++++k++w++y
  PH01005685G0080  67 RGTFSQEEEDLIVHLHSMLGNK-WSQIAAQLP-GRTDNEVKNFWNSY 111
                      899*******************.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.102961IPR017930Myb domain
SuperFamilySSF466893.19E-2912108IPR009057Homeodomain-like
SMARTSM007173.0E-121363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
CDDcd001673.80E-111761No hitNo description
PROSITE profilePS5129426.82362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2665116IPR009057Homeodomain-like
SMARTSM007178.7E-1666114IPR001005SANT/Myb domain
PfamPF002499.5E-1667111IPR001005SANT/Myb domain
CDDcd001673.21E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAKQSCCHKK KLRRGLWSPE EDVKLMNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGTF SQEEEDLIVH LHSMLGNKWS QIAAQLPGRT DNEVKNFWNS YIKKKLRERG  120
IDPVTHKPLA EVSGSRGGAA PTTSSACPAV FSDAELIPTT TPIQAPLVEV KPLMLDGLKM  180
SPDWSVAFAS NGMPSSLSGY QAPSLLAGCA FDLDGLQLQH CGAIPARVVP SASSSSTLTS  240
MAGLSPAAAD VEQCNNNVAG AILPWPELGP NNTVDAVSGH VDHYAGALDE LRWSDYFDGA  300
FQAAATQQGA LQGQCVYDGG KDDDDTVQFD VHGLSNWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005685G0080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365351e-167BT036535.2 Zea mays full-length cDNA clone ZM_BFb0120O20 mRNA, complete cds.
GenBankBT0410771e-167BT041077.1 Zea mays full-length cDNA clone ZM_BFc0171O14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150799.11e-145transcription repressor MYB6-like
TrEMBLA0A0A9ASW41e-164A0A0A9ASW4_ARUDO; Uncharacterized protein
STRINGTraes_7DL_AD4395F8F.11e-144(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.19e-78myb domain protein 50