PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01005526G0030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRAS | ||||||||
Protein Properties | Length: 641aa MW: 71718.2 Da PI: 6.3604 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 359 | 6.9e-110 | 260 | 631 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d + a++lL++++++a+p+gd++qRla++f+e+L+arla+++s + ++l +++ts ++ l+a++l+ + + k+ PH01005526G0030 260 LRTLLIHCAQAVATDDRRSATELLKQIKQHANPQGDATQRLAHCFAEGLQARLAGTGSLVHQSLMAKRTS---AVDILQAYQLYMAAICFKKVF 350 6789***************************************************999999999998888...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ N++I + g++++Hi+D++i +G+QWp++l+ +a+R++gpp++RiTg++ p++g +e++eetg+rL+++A+e+gvpf++++++a ++ PH01005526G0030 351 FIFSNHTIFNVSLGKKKIHIVDYGIHYGFQWPCFLRRIADREGGPPEVRITGIDIPQPGfrPTERIEETGRRLSNYAREFGVPFKYHAIAAAKM 444 **********************************************************9******************************999** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e+++ e+L+++p+E+l+Vn+ +q ++l+desv ++s+rd vL+ +++++P+ ++++ + +++++ F++rf eal y+sa+fd l+++ pr++e PH01005526G0030 445 ESVRKEDLNIDPDEVLIVNCLYQFKNLMDESVVIDSPRDIVLNNIRKMRPHAFIHAIVNGSYSAPFFVTRFREALFYFSAMFDILDTTTPRNNE 538 ********************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +r+ +E+ ++gr++ nv+aceg++r+er et+++W+ r ++aG+k++pl+ ++++ a+ ++k++ + + ++ ++++l++gWk+r L+++S W PH01005526G0030 539 QRMLIEQNIFGRSALNVIACEGTDRVERPETYKQWQVRNQRAGLKQLPLNPDIVQVAREKVKKCYHKDFVIDVDHQWLLQGWKGRILFAISTW 631 *****************************************************************889************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.354 | 234 | 612 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-107 | 260 | 631 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MEENIDDKFF YDYPDHPALL QAQQPFLDIL SDPSSQSNSS DSNNNHLSPS SSDASVSTAA 60 ALRTSAAVNS YDPLQYTSID LDPAAFFGGG VNSDLMSSAF LKGMEEANKF LPSEDKLVID 120 LEASSGEFLK GVEEANKFLP SEDKLLVGFN GVSAPAVVAS VKKEEAVDAV VAGRGRKNPY 180 DDEELELEGG RSSKQTAVQG DDVAARDMFD KVMMTSHEMC VQQMKNLRIA MQEEAAKNEA 240 DSGGNRKARG RRGGKDVVDL RTLLIHCAQA VATDDRRSAT ELLKQIKQHA NPQGDATQRL 300 AHCFAEGLQA RLAGTGSLVH QSLMAKRTSA VDILQAYQLY MAAICFKKVF FIFSNHTIFN 360 VSLGKKKIHI VDYGIHYGFQ WPCFLRRIAD REGGPPEVRI TGIDIPQPGF RPTERIEETG 420 RRLSNYAREF GVPFKYHAIA AAKMESVRKE DLNIDPDEVL IVNCLYQFKN LMDESVVIDS 480 PRDIVLNNIR KMRPHAFIHA IVNGSYSAPF FVTRFREALF YFSAMFDILD TTTPRNNEQR 540 MLIEQNIFGR SALNVIACEG TDRVERPETY KQWQVRNQRA GLKQLPLNPD IVQVAREKVK 600 KCYHKDFVID VDHQWLLQGW KGRILFAIST WVANDTSSYF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-43 | 264 | 631 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01005526G0030 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579265.1 | 0.0 | scarecrow-like protein 34 | ||||
Swissprot | O80933 | 1e-172 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A0E0FDC6 | 0.0 | A0A0E0FDC6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G11480.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-170 | GRAS family protein |