PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01005386G0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRF | ||||||||
Protein Properties | Length: 412aa MW: 46270.2 Da PI: 9.6803 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.6 | 4.5e-23 | 136 | 180 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrC RtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+ PH01005386G0020 136 DPEPGRCHRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVES 180 79****************************************986 PP | |||||||
2 | QLQ | 57.3 | 4.7e-20 | 78 | 113 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll i+k PH01005386G0020 78 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 113 9******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.6E-11 | 77 | 113 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.762 | 78 | 113 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.4E-14 | 78 | 111 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.681 | 136 | 180 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.8E-19 | 137 | 179 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MELGEVLGLQ GLGVPSPKES DLGLTKRSNF TQAASYPSPF LDEQKILRFS KAAHTLPSGM 60 DFGRSNEHMF LLSRTKRPFT PSQWMELEHQ ALIYKYLNAK APIPSSLLIS ISKSFRSSNR 120 MSWRPLYQGF KSAESDPEPG RCHRTDGKKW RCSKEAMADH KYCERHINRN RHRSRKPVES 180 QTRKTTKEIP AAGSLSSPVS QGSFKKAKVN ELKPGSVSYW TDSLNRTMLS KEKANKPAED 240 NNAPLLNSTN RQPTLSLLCQ LKQQNKPDKF SPTVDSESIS SNTALKPWES SNQQSNKSIS 300 CTRLLDRECL QSVLQNFSLP KNEKIESQKN KASNPIQVSS TFYSSPEGPR ISCLTSNMTQ 360 VQEDCISSSW EMPQGGPLGE ILTNSKNTED LTNKCESRSY GWLLNLEDHE M* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01005386G0020 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650403.1 | 0.0 | PREDICTED: growth-regulating factor 9 | ||||
Swissprot | Q9FRG8 | 0.0 | GRF9_ORYSJ; Growth-regulating factor 9 | ||||
TrEMBL | J3LRI9 | 0.0 | J3LRI9_ORYBR; Uncharacterized protein | ||||
STRING | OB03G36650.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13124 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 8e-38 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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