PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005345G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 265aa    MW: 28518.5 Da    PI: 4.4348
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005345G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.8e-194699356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     k++++++eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  PH01005345G0020 46 KKRRLSAEQVRALERSFEVENKLEPEHKARLARDLGLQPRQVAVWFQNRRARWK 99
                     45689************************************************9 PP
2HD-ZIP_I/II131.92.5e-4245137193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrls+eqv++LE+sFe e+kLepe+K++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L++++++L +e+ke
  PH01005345G0020  45 EKKRRLSAEQVRALERSFEVENKLEPEHKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYTALRHSYDALRLDHDALRRDKDALFAEIKE 137
                      69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.46E-1935103IPR009057Homeodomain-like
PROSITE profilePS5007117.18441101IPR001356Homeobox domain
SMARTSM003897.8E-1844105IPR001356Homeobox domain
PfamPF000461.4E-164699IPR001356Homeobox domain
CDDcd000861.25E-1746102No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2047108IPR009057Homeodomain-like
PRINTSPR000312.1E-57281IPR000047Helix-turn-helix motif
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PRINTSPR000312.1E-58197IPR000047Helix-turn-helix motif
PfamPF021831.2E-16101142IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKRPGGGGPS LLSMANPNDD GYVGVRMEAE GDAEEEMMAC GGGGEKKRRL SAEQVRALER  60
SFEVENKLEP EHKARLARDL GLQPRQVAVW FQNRRARWKT KQLERDYTAL RHSYDALRLD  120
HDALRRDKDA LFAEIKELKA KLGDGEAAAS FTSVKEEPAA SDEPPRAGVG VGSSESDSSA  180
ILNDTDAAGA APAAEAPAAE VGTLLAAPGA AAASHGEVFF HGNFLKVEED ETGFLDDDEP  240
CGGFFADDQP PPLAWWTEPT EPWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005345G0020
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957072.11e-146homeobox-leucine zipper protein HOX4
SwissprotQ6K4981e-132HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH371e-132HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLK3ZW401e-145K3ZW40_SETIT; Uncharacterized protein
STRINGSi030822m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-46homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]