PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005322G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 793aa    MW: 87485.5 Da    PI: 6.5126
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005322G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-181231902999
                      -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + +++el+v+v+r+
  PH01005322G0010 123 QPP-TQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGDNGELRVGVRRA 190
                      333.348************************************************..3489999****996 PP
2Auxin_resp113.61.8e-37215297183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp  W +S+WrsLk
  PH01005322G0010 215 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMDSLKCNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWAESQWRSLK 297
                      89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.5E-11109191IPR003340B3 DNA binding domain
SuperFamilySSF1019368.54E-25112218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-27119204IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-16122190IPR003340B3 DNA binding domain
CDDcd100171.15E-14124189No hitNo description
PROSITE profilePS5086311.11128191IPR003340B3 DNA binding domain
PfamPF065071.2E-34215297IPR010525Auxin response factor
PfamPF023091.3E-11660745IPR033389AUX/IAA domain
PROSITE profilePS5174523.182661745IPR000270PB1 domain
SuperFamilySSF542774.07E-12664737No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MSPSEAAAAA AAEGVGAAVR GGGGGGGGGG AEDGLFSELW SACAGPLVTV PRVGEKVFYF  60
PQGHIEQVEA STNQVAEQRM QLYDLPWKIL CEVMNVELKA EPDTDEVYAQ LTLLPESKDM  120
SRQPPTQELV AKDLHGVEWR FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRGDN  180
GELRVGVRRA MRQQTNVPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK PRTSPAEFVV  240
PYDRYMDSLK CNYSIGMRFK MRFEGEEAPE QRFTGTIVGM GDSDPAGWAE SQWRSLKVRW  300
DEASSIPRPE RVSPWQIEPA VSPPPINPLP VPRTKRLRPN VIAAPADSSA QAKEAAPKVA  360
VETQQNVLQR AFQSQENAIP KTGFGDGSEL DTAQKSILRP SGFDREKINI PTQRKLGSDG  420
WMQMNRPESY NEMLSGFQPP KDVQNQQGFC SLPEQIAAGH SNFWHTVNAQ YQDQQGNHNM  480
FPGSWSLMPP NTGFGSNKQH YPMMQEVGAL PQRAANTKFG NGVYAALPGR GMEQYSAGWF  540
GHMIPSSHMD GAQPCLIKPH PFVVAHGDVQ KTKGTSCKLF GIHLDNPVKS EPSKSPSSIA  600
YDGMPQTPEA AELRRPDATE VEKCSDPSKT LKPLDAPQAD SVPEKHFSRN MLCKSQGGST  660
RSCKKVHKQG IALGRSVDLT KFNGYEELIA ELDDMFDFNG ELKSSNKEWM VVYTDNEGDM  720
MLVGDDPWNE FCNMVHKIFI YTREEVQRMN PGTLNSRHVG DFGQRQDQTA YPICHAHDGS  780
LEALGVDVDC SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-138183192354Auxin response factor 1
4ldw_A1e-138183192354Auxin response factor 1
4ldw_B1e-138183192354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005322G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237690.10.0auxin response factor 23 isoform X1
RefseqXP_010237691.10.0auxin response factor 23 isoform X1
RefseqXP_014758384.10.0auxin response factor 23 isoform X2
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLA0A0E0F6800.0A0A0E0F680_9ORYZ; Auxin response factor
STRINGOMERI11G12320.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2