PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01005298G0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NF-YC | ||||||||
Protein Properties | Length: 160aa MW: 16671.7 Da PI: 5.36 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 47.3 | 4.6e-15 | 40 | 123 | 18 | 100 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprde 100 + +lP+ r+kki+++d+d+++++ ea l++ a elf+ l++ + a rr+++ + + aa ++ + dfl+d p e PH01005298G0040 40 RPALPVGRVKKIIRVDQDIRKVTGEAALLIAVATELFLGSLAVGANTAAARRGRRAVRAAHVRAAArAHRPTADFLLDCLPAAE 123 668***********************************************************88762566799*****999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.85E-13 | 41 | 122 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.7E-16 | 43 | 120 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-12 | 43 | 104 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MAAAAAAAVD DDEPTEAMEQ VEEEERAEAH AEEEAEASLR PALPVGRVKK IIRVDQDIRK 60 VTGEAALLIA VATELFLGSL AVGANTAAAR RGRRAVRAAH VRAAARAHRP TADFLLDCLP 120 AAEEAPRARS AAGSDGAGGE AKPLPRGTRR IDAFFNTVT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01005298G0040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457226.1 | 2e-44 | nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A3B6EFW6 | 1e-44 | A0A3B6EFW6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446N6Y2 | 1e-44 | A0A446N6Y2_TRITD; Uncharacterized protein | ||||
STRING | Pavir.J40808.1.p | 6e-45 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 3e-12 | nuclear factor Y, subunit C13 |