PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01005226G0080

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 397aa MW: 43052.2 Da PI: 9.2423

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01005226G0080	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4e-32	207	260	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PH01005226G0080 207 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 260 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.72E-15	204	261	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	205	260	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-23	207	261	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-7	208	259	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MELFPRQPDL ELQISSRPNS SSSESTPPAA PTAWWRPSDS GVNSSMDHFR HLGFWRATDS 60 APAKDTPSAR TATLPPSDHH LLSLATAAAA ASNPTASTSG SAATATAAAT ASTSIPYNTA 120 AGYKQQQANS HGYYSNNSSH YHLTNALLKP IRGVPIYHYH PFQLQQQQLQ HQHQHHHMVM 180 ASQSNGGGGF FSSRSRFPPG RRSVRAPRMR WTTTLHARFV HAVELLGGHE RATPKSVLEL 240 MDVKDLTLAH VKSHLQMYRT IKNTDKPAVS SGQNDGFENG SAGEISDDSL PETRSTRRTT 300 DQSLAQNING TSANSHNSNK YSACGLWSNS SSRAGWPDFG SPSESNTETG RQYLKEAPSK 360 SFEMSEMNVS CISETSSPPA GQPNLEFTLG RPQSDR*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MELFPRQPDL ELQISSRPNS SSSESTPPAA PTAWWRPSDS GVNSSMDHFR HLGFWRATDS  60
APAKDTPSAR TATLPPSDHH LLSLATAAAA ASNPTASTSG SAATATAAAT ASTSIPYNTA  120
AGYKQQQANS HGYYSNNSSH YHLTNALLKP IRGVPIYHYH PFQLQQQQLQ HQHQHHHMVM  180
ASQSNGGGGF FSSRSRFPPG RRSVRAPRMR WTTTLHARFV HAVELLGGHE RATPKSVLEL  240
MDVKDLTLAH VKSHLQMYRT IKNTDKPAVS SGQNDGFENG SAGEISDDSL PETRSTRRTT  300
DQSLAQNING TSANSHNSNK YSACGLWSNS SSRAGWPDFG SPSESNTETG RQYLKEAPSK  360
SFEMSEMNVS CISETSSPPA GQPNLEFTLG RPQSDR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-16	208	262	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-16	208	262	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-16	208	262	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-16	208	262	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00174	DAP	Transfer from AT1G32240	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01005226G0080

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233652.1	1e-125	probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	2e-49	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A0A8Z9Z7	1e-135	A0A0A8Z9Z7_ARUDO; Uncharacterized protein
STRING	BRADI3G00550.1	1e-115	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	5e-47	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]