PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01005192G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 30825.4 Da PI: 6.7581 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +v+++G+g+W+++++ g+ R+ k+c++rw +yl PH01005192G0010 14 KGPWTPEEDIILVSYVQEHGPGNWRAVPANTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E+ l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l PH01005192G0010 67 RGNFSGQEENLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.542 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.76E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.146 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGRPPCCSKE GVKKGPWTPE EDIILVSYVQ EHGPGNWRAV PANTGLMRCS KSCRLRWTNY 60 LRPGIRRGNF SGQEENLIVH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLQRTA 120 ALSSSTEQQG SPPPNKGQWE RRLQTDINLA RRALREAISV DVGASPSGGS ATSPAPSEST 180 AYALSAENIS RMLDGWAPGK TAGAGNPATP GAAESASGPS ELTEWSGSSA SNCAAPVLAS 240 SLFGYESKTS AAAAGEVPLS AIESWLLLDD SSEQPAQEGL LFEISQACS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-25 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01005192G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098892 | 0.0 | FP098892.1 Phyllostachys edulis cDNA clone: bphylf052j22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561588.1 | 1e-115 | myb-related protein 306 | ||||
Refseq | XP_025794825.1 | 1e-114 | transcription factor MYB30-like | ||||
Swissprot | P81392 | 3e-99 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A2S3IQ77 | 1e-113 | A0A2S3IQ77_9POAL; Uncharacterized protein | ||||
TrEMBL | I1H511 | 1e-113 | I1H511_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G61160.1 | 1e-114 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.2 | 1e-92 | myb domain protein 96 |
Publications ? help Back to Top | |||
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