PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01005036G0050

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 393aa MW: 42593.4 Da PI: 8.2359

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01005036G0050	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.6e-32	225	280	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+ PH01005036G0050 225 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRQLMKVDGLTNDEVKSHLQKYRLH 280 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.424	222	282	IPR017930	Myb domain
SuperFamily	SSF46689	6.63E-17	223	283	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-28	223	283	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-26	225	280	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-6	227	278	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MQEPSLHADR NRARRRCREY LLALEEERRK IQVFQRELPL CLGLVTQTIE GMRSQMDGVG 60 SEETVSDHGP VLEEFIPLKP SLSLSSSEED STHAAAPTDA GKKEEAETPE RRSPPAENKK 120 ATPNWLQSVQ LWSQEPQQSS PDKELPCKPV ALNARKAGGA FHPFKKEKRT ELPASSTTAA 180 VSSAVAGDSG DKATSDTERH KDKDSKDVED KEKDKEEGQS QPHRKPRRCW APELHRRFLQ 240 ALQQLGGSHV ATPKQIRQLM KVDGLTNDEV KSHLQKYRLH TRRPSSTVQS SAAVAPPVPQ 300 FVVVGGIWVP PTQYAAAAAA AAAAAQPQVQ LSAADALGSA DPVYAPVATL PSGLQPHSQK 360 QSSRYSEGRR SGDTGDACSA SPAVSSSSQT TSA

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MQEPSLHADR NRARRRCREY LLALEEERRK IQVFQRELPL CLGLVTQTIE GMRSQMDGVG  60
SEETVSDHGP VLEEFIPLKP SLSLSSSEED STHAAAPTDA GKKEEAETPE RRSPPAENKK  120
ATPNWLQSVQ LWSQEPQQSS PDKELPCKPV ALNARKAGGA FHPFKKEKRT ELPASSTTAA  180
VSSAVAGDSG DKATSDTERH KDKDSKDVED KEKDKEEGQS QPHRKPRRCW APELHRRFLQ  240
ALQQLGGSHV ATPKQIRQLM KVDGLTNDEV KSHLQKYRLH TRRPSSTVQS SAAVAPPVPQ  300
FVVVGGIWVP PTQYAAAAAA AAAAAQPQVQ LSAADALGSA DPVYAPVATL PSGLQPHSQK  360
QSSRYSEGRR SGDTGDACSA SPAVSSSSQT TSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-12	225	278	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-12	225	278	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-12	225	278	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-12	225	278	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01005036G0050

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP091266	0.0	FP091266.1 Phyllostachys edulis cDNA clone: bphylf038j06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954868.3	1e-171	transcription factor NIGT1
Swissprot	Q6Z869	1e-163	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A0A9G3F3	0.0	A0A0A9G3F3_ARUDO; Uncharacterized protein
STRING	Si019945m	1e-173	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	4e-60	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]