PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004993G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 325aa    MW: 35365.9 Da    PI: 4.3812
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004993G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.6e-2073126356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le+ Fe+++++  e+++eLA klgL+ rqV vWFqNrRa++k
  PH01004993G0070  73 KKRRLTPEQVHLLERSFEEENKLEPERKTELALKLGLQPRQVAVWFQNRRARWK 126
                      5678*************************************************9 PP
2HD-ZIP_I/II128.52.7e-4172163192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrl+ eqv+lLE+sFeee+kLeperK+ela +LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L ++++ L++++ 
  PH01004993G0070  72 EKKRRLTPEQVHLLERSFEEENKLEPERKTELALKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHLLQSQVV 163
                      69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.48E-2066130IPR009057Homeodomain-like
PROSITE profilePS5007117.79968128IPR001356Homeobox domain
SMARTSM003897.4E-2071132IPR001356Homeobox domain
CDDcd000862.93E-2073129No hitNo description
PfamPF000461.4E-1773126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-2174135IPR009057Homeodomain-like
PRINTSPR000315.6E-699108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000315.6E-6108124IPR000047Helix-turn-helix motif
PfamPF021833.9E-17128170IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MESGRLIFNT SGSGAGQMLF LDCGAGGGGG MFHRGGRPVL GMEEGGRGVK RPFFTSPDEL  60
LEEEYYDEQL PEKKRRLTPE QVHLLERSFE EENKLEPERK TELALKLGLQ PRQVAVWFQN  120
RRARWKTKQL ERDFDRLKAS FDALRADHDA LLQDNHLLQS QVVSLTEKLQ EKEAVEGSVS  180
EAVDASVLPA ADVKVYSAEQ PVAEDAAVAA FEVQQVKAED RLSTGSGGSA VVDADALLGC  240
GGRVAAVDSS VESYFPGGDE YHDCVMGPVD HGAGGIQSEE DDGAGSDEGC SYYADDAGVL  300
FAGHGHHHHA DDDGDNGQIS WWMWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004993G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947900.0FP094790.1 Phyllostachys edulis cDNA clone: bphylf043j04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647837.11e-172PREDICTED: homeobox-leucine zipper protein HOX16 isoform X1
SwissprotQ6YWR41e-157HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLJ3LGQ11e-170J3LGQ1_ORYBR; Uncharacterized protein
STRINGOB02G38180.11e-171(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-64homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]