PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01004959G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 24004.2 Da PI: 7.2723 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7.1e-09 | 147 | 187 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L PH01004959G0010 147 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYLKFL 187 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.767 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-13 | 143 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-14 | 143 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-12 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-6 | 147 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.83E-6 | 161 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDFDMLNSNP EAQLELMNTM LQLEQLTALP EHAMVVPSTP PSPCMQAPHH FSSVPHMSAG 60 TNGAAYNDQY SQQLPAAAYN GSHLSEYTTQ PLAGGTGCDG SAVGSAAMRE MIFHIAALQP 120 VNTDPDTVRP PKRRNVRISN DPQSVAARMR RERISERIRI LQRLVPGGTK MDTASMLDEA 180 IHYLKFLKMQ VQSLERAAAA SGHRPSPTSA AVAYPGLNGP W* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 133 | RPPKRR |
2 | 147 | 152 | RMRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01004959G0010 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004693 | 1e-124 | AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06. | |||
GenBank | AP014964 | 1e-124 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-124 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158190.1 | 2e-96 | transcription factor HEC2-like | ||||
Swissprot | Q9SND4 | 1e-40 | HEC2_ARATH; Transcription factor HEC2 | ||||
TrEMBL | A0A0A8YXS6 | 1e-99 | A0A0A8YXS6_ARUDO; Uncharacterized protein | ||||
STRING | ORUFI08G19930.1 | 3e-87 | (Oryza rufipogon) | ||||
STRING | ONIVA08G19790.1 | 3e-87 | (Oryza nivara) | ||||
STRING | ORGLA08G0155700.1 | 3e-87 | (Oryza glaberrima) | ||||
STRING | ORGLA08G0237200.1 | 3e-87 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3103 | 36 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 1e-38 | bHLH family protein |
Publications ? help Back to Top | |||
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