PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004889G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 1885aa    MW: 202392 Da    PI: 4.3021
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004889G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.5e-0717911813527
                       --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                        C+ff  tG Ck Gd C F H++
  PH01004889G0040 1791 VCKFFVDTGSCKKGDHCDFYHPQ 1813
                       7********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.5E-9519570IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.79E-8521570IPR011011Zinc finger, FYVE/PHD-type
CDDcd155684.67E-18528570No hitNo description
SMARTSM002493.1E-5528574IPR001965Zinc finger, PHD-type
Gene3DG3DSA:1.10.245.101.9E-24768854IPR003121SWIB/MDM2 domain
SuperFamilySSF475929.16E-20771852IPR003121SWIB/MDM2 domain
SMARTSM001510.0014771856IPR019835SWIB domain
PfamPF022013.1E-14778851IPR003121SWIB/MDM2 domain
SMARTSM007197.7E-359121032IPR004343Plus-3 domain
PROSITE profilePS5136013.8329121055IPR004343Plus-3 domain
SuperFamilySSF1590424.18E-249131052IPR004343Plus-3 domain
PfamPF031262.0E-159171010IPR004343Plus-3 domain
SuperFamilySSF552778.24E-1812221285IPR003169GYF domain
PROSITE profilePS5082915.51312331287IPR003169GYF domain
CDDcd000724.59E-1512331286No hitNo description
SMARTSM004447.6E-1912341289IPR003169GYF domain
PfamPF022133.3E-1312351279IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.2E-1712351286IPR003169GYF domain
SMARTSM003562.3E-617871813IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.57317911814IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-417911812IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-417911813IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1885 aa     Download sequence    Send to blast
MDDDDLAAAA TALDPRSPPP SQELASSASA LPADNPASTA GDTLAVDPPV AAAAGDGEQV  60
PFDDEKAPVP SEAIPQEADS AAADEQVPEA AEAVLEEAAS AAVDEAHEDE DPVRRDANPA  120
SEGGVAQGDS LDGGAYISNV SLGVGGDVGA EIDGLVSEGT GIPDAVEAMP NTPDIVLEGD  180
GDGEALDGEG DKSDESAKAG CDDMVVTELV GVAEDSDPAD ITKADGPEED AVVGVQLDGI  240
NVAVDDPTPT EMGASLVDDD SDMVSNRGGD SFDDQTGQGI GGGAHDGADE DDGPRVDKNV  300
PVSDDGEDFQ DEQGAKMDVV ATTVLNDVEA ELVKAGDDVA DEDTKMHTLS PTGDDNEEEE  360
GVPMAGVVAT DEEGRQMDPV AMTRDDNEEK TTGTAGVDAT GEDIQVDTIG LTGDDNEEKE  420
VAAAGDDGAD EEGMQMDAVT TTGDEDEEDG MASQNVAEEA DSVPEEAEVC MVGNDIPEEE  480
AVQIDEDDDD DEPPPLTRKG GGRRKRGRPS SKAQAVVKPS VKRKDEEVCF ICFDGGDLVV  540
CDRRGCPKAY HPSCVNRDDE FFKSKGRWNC GTWGGTFVAT VRNLLTICVT HVPIRGNKGF  600
CETCMNTVML IENKEEATEQ MDVDFDDKSS WWYLFKDYWL NLKTKLSLTL EEISAAKSQK  660
NGSSLVIRDN DLSELPDTND EEEANSDSSS GRHLESSPSK KRGRKRSKHA ANEDSSKGKQ  720
STRKSTKRGL SVSHDAKNST GRKVRKLSKR ASSNEHRPKE SESVGTSTSS AEESSWASKE  780
LLDFVAHMRN GDKSVLSQFD VQALLLEYIK CNNLRDPRRK SQIVCDYLLQ SLFGKIRVGH  840
FEMLKLLESH FLLSEVSPID IDGNHRGVVD PDPSQDADGN SEASAVMSSE KKKKSRKYDQ  900
RALQTNLDDY AAIDNHNISL MYLRRNLIEE LIGDVDTFDE KVLRSFVRIR ISGTGQRQDI  960
YRLVQIVGTG TAAGKYKCGK KTTDITLEIL NLDKREVITI DITSNQEFTE LYLLLVCIPI  1020
EECKRLRQSM KCGFIPRLTV GEVQEKARVL QAVKVNDFCV KECVEKLQLL STPEERVRRL  1080
NEEPEIHADP TMNPDYESPE EQEQDTERSS FNKSRGSFFK KDSKPVSPGK GEGRNSAQRD  1140
SKTNWDSNRN TWGESTTHLE SPHGRRSTFS PRGESSGHTG KSESPNAGAQ TVRMEATTGN  1200
APRGLSGVSS ETLAANVGSG ATAASQSAVN ESEKIWQYMD PCGKVQGPFS IVQLRKWNSS  1260
GYFPPSLKIW KSSEKQDDSI LLTDALVGKF EKDLPPWELP LGSSSQINKI YLRSNSDVGS  1320
GSCSDSLLEE STKAGVQTSK SAVPNRSQSF SGRVGQRHDY DTTNLGSTMT QSGAQGYYGM  1380
QNSQAAYGMQ NSQAAYATQQ SLTGSWNASS SQFGTTVNPM TLSQPAMGGY SVGQNNAVTG  1440
NVGQLTPVPA PATASAEIVN SQLQSQNQIA SVLPQRDGRL ADENDLRLGE DASHGRMVSS  1500
GEDLGPVDAQ PGAAQSNTQQ LEAPADARNR LSTDASNSMM PSQLMSTPSA EPVQPSATAV  1560
TGGDSQSSGW AIPAQVANTS GQAQGAGNMN WGAALQSNAS MGWGMVGQTN MNMSWGAPAQ  1620
GAASYNMGST MPTQPNAIPN MGWVAPNPGN TNMDMIWAST QDQGTPNAAT MMGAQMQGVA  1680
MAPWGAIAQG NANSYTGWGT QVGNMNQNIG WGSPMQGNPG PNPGNGSGQG NNNMNWNSPN  1740
GNPNWNNQQR DNGGRHAGHG DDFNGDDSGG RSWRSQSGGD GGSWGNRWGV VCKFFVDTGS  1800
CKKGDHCDFY HPQTNDGYPS RNDGHFDRQT SCNEKRYDRH NERNDQRPSG NERHYDRHDD  1860
RHSDRDNDRS DDRQADRSES RERR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004889G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611529.10.0zinc finger CCCH domain-containing protein 19
TrEMBLA0A0D3H9A20.0A0A0D3H9A2_9ORYZ; Uncharacterized protein
STRINGOBART09G17390.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP717938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-131DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding